Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10a04
         (636 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT024333-1|ABC86395.1|  157|Drosophila melanogaster IP10176p pro...    29   5.3  
AE014296-2106|AAF49950.3|  295|Drosophila melanogaster CG9760-PB...    29   5.3  

>BT024333-1|ABC86395.1|  157|Drosophila melanogaster IP10176p
           protein.
          Length = 157

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -3

Query: 265 SHIYSYNSTRNTLYFNTIYSNY*NHQKYYSTWNFSSTINS*HNCRTFINNIPKK 104
           SH Y++ +  N  Y+N  Y N  NHQ +++     ST+   H   T     PKK
Sbjct: 11  SHYYAWWAYIN--YYNDDYYNQWNHQLFFTVTELFSTVLVMHLANTTNVVTPKK 62


>AE014296-2106|AAF49950.3|  295|Drosophila melanogaster CG9760-PB
           protein.
          Length = 295

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -3

Query: 265 SHIYSYNSTRNTLYFNTIYSNY*NHQKYYSTWNFSSTINS*HNCRTFINNIPKK 104
           SH Y++ +  N  Y+N  Y N  NHQ +++     ST+   H   T     PKK
Sbjct: 118 SHYYAWWAYIN--YYNDDYYNQWNHQLFFTVTELFSTVLVMHLANTTNVVTPKK 169


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,903,525
Number of Sequences: 53049
Number of extensions: 256603
Number of successful extensions: 472
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)