Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10a04
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75540-6|CAN86598.1|  584|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z75540-3|CAD01084.1|  581|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z75540-2|CAA99848.1|  582|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>Z75540-6|CAN86598.1|  584|Caenorhabditis elegans Hypothetical
           protein F37D6.2c protein.
          Length = 584

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 181 YSTWNFSSTINS*HNCRTFINNIPKK 104
           + +WN + T +  H CR  IN+I +K
Sbjct: 470 FKSWNGNRTASHYHKCRRSINDIERK 495


>Z75540-3|CAD01084.1|  581|Caenorhabditis elegans Hypothetical
           protein F37D6.2b protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 181 YSTWNFSSTINS*HNCRTFINNIPKK 104
           + +WN + T +  H CR  IN+I +K
Sbjct: 467 FKSWNGNRTASHYHKCRRSINDIERK 492


>Z75540-2|CAA99848.1|  582|Caenorhabditis elegans Hypothetical
           protein F37D6.2a protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 181 YSTWNFSSTINS*HNCRTFINNIPKK 104
           + +WN + T +  H CR  IN+I +K
Sbjct: 468 FKSWNGNRTASHYHKCRRSINDIERK 493


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,350,956
Number of Sequences: 27780
Number of extensions: 151112
Number of successful extensions: 289
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)