Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10a02
         (846 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253     32   0.66 
04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388     32   0.66 
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33...    30   2.7  
06_03_0757 + 24267599-24268882                                         29   4.7  
01_06_0203 - 27487469-27489787                                         28   8.1  

>04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253
          Length = 326

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = -2

Query: 806 CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 627
           CI+  +  C  +R+    + + E + +TYE+ E  LK  ++ E    + +     K +A 
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289

Query: 626 LSTLEMTQ 603
             TL++ Q
Sbjct: 290 AETLDVKQ 297


>04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388
          Length = 327

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = -2

Query: 806 CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 627
           CI+  +  C  +R+    + + E + +TYE+ E  LK  ++ E    + +     K +A 
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289

Query: 626 LSTLEMTQ 603
             TL++ Q
Sbjct: 290 AETLDVKQ 297


>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
            336577-336734,337180-337310,337385-337472,337587-337690,
            338346-338444,339060-339116,339262-339337,339519-339602,
            339969-340010,340128-340198,341516-341564,342370-342441,
            343149-343286,343393-343473,344166-344353,344591-345188,
            345274-345342,346729-346854,347048-347175,347986-348142,
            348342-348388,348472-348535,348691-348765,349292-349414,
            349797-349982,351179-351303,351390-351459,351974-352101,
            352585-352726,353065-353163,353239-353285,353598-353652,
            353758-353967,354686-354757,354836-354905,355231-355414,
            355521-355644,355732-355863,356252-356317,356805-356852,
            357572-357676,357728-357865,358097-358399,358482-358594,
            359082-359148,359236-359310,359395-359517,359610-359618,
            360156-360320,360401-360502,361545-361696,361794-361995,
            362079-362126,362215-362298,362613-362657,363302-363385,
            363890-363970,364044-364133,364217-364279,364824-364841,
            365238-365378,365494-365550,366091-366185,366275-366383,
            367067-367156,367308-367387,367480-367558,367742-367903,
            368005-368136,368335-368469,368553-368618,369317-369457,
            369575-369648,369685-369910
          Length = 2905

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = -2

Query: 842  YEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKT-YELAEFDLKNLSSLESYET 666
            YE    +N     +++++ K  ++ T+ + + S  K +KT Y +   +L+   +L+  E 
Sbjct: 2187 YEERLSSNEWQAALRLRKYKSKELDTLMKRLKSSSKSEKTDYSVKIQELQKQLALDEEEA 2246

Query: 665  LKIKLALSKYMAML 624
             KI+   +K+ A +
Sbjct: 2247 GKIQCTHAKFSAKI 2260


>06_03_0757 + 24267599-24268882
          Length = 427

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 655 NWRSANTWLCSAPWK*PSRCWK 590
           +WR A  W+C  PW    + W+
Sbjct: 348 SWRPAGPWVCFNPWPAQQQAWR 369


>01_06_0203 - 27487469-27489787
          Length = 772

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 227 DYDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSL 84
           DYD +L  +S+   + +  +T   IVE  Y+H    KN G+ EY   L
Sbjct: 249 DYDGNLRIYSLDASDGSWTVTWQAIVEMHYVHGMCGKN-GICEYLPEL 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,636,256
Number of Sequences: 37544
Number of extensions: 399623
Number of successful extensions: 1085
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)