Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10a02
         (846 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine re...    32   0.45 
Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical pr...    30   2.4  
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      29   4.2  
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr...    29   5.5  
U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical p...    28   7.3  
U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical p...    28   9.6  
Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical pr...    28   9.6  
Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical pr...    28   9.6  
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    28   9.6  
AF125964-5|AAP13765.1|  722|Caenorhabditis elegans Hypothetical ...    28   9.6  
AF125964-2|AAD14754.1|  726|Caenorhabditis elegans Hypothetical ...    28   9.6  

>AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine
           receptor, class w protein40 protein.
          Length = 363

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -2

Query: 164 LLLIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTMSTKTSNLL 18
           LL+I+      YYIF+   + E C S T HS+    L + +S+   NLL
Sbjct: 85  LLIIISFIIYFYYIFQASFIHEKCTSPTSHSML---LLAVLSSSIRNLL 130


>Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -2

Query: 212 LSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTM 42
           LS+F +T  E    +   + V H +LHYY      ++ +  SL   SL TN ++S +
Sbjct: 78  LSNFFLTHNEHNMEVIFPVKVFH-FLHYYFAYAQYIYNFFISLNRFSLITNPIKSEL 133


>Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -2

Query: 212 LSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTM 42
           LS+F +T  E    +   + V H +LHYY      ++ +  SL   SL TN ++S +
Sbjct: 78  LSNFFLTHNEHNMEVIFPVKVFH-FLHYYFAYAQYIYNFFISLNRFSLITNPIKSEL 133


>Z78414-1|CAB01669.2|  472|Caenorhabditis elegans Hypothetical
           protein W09D12.1 protein.
          Length = 472

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 358 RLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILLVK 495
           RL+I  I GLS+  +STPS  V++   P  L S+V++     L  +
Sbjct: 260 RLAIRKIYGLSSVDHSTPSSDVDRSKCPKHLDSVVAINDQEWLFFR 305


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical protein
            R03E1.1 protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 470  VTETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 369
            +T   + SIPG  I+  +  GV+   ++RP +VK
Sbjct: 992  LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 470  VTETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 369
            +T   + SIPG  I+  +  GV+   ++RP +VK
Sbjct: 992  LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025


>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
           protein K06C4.15 protein.
          Length = 1067

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 376 IDGLSTEHNSTPSFSVNKMGSPGML 450
           I  L T H STPS    ++ SPGM+
Sbjct: 142 ISDLRTPHGSTPSTGTPRLSSPGMV 166


>U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical
           protein B0507.1 protein.
          Length = 615

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 442 PENPFCLQKTRGCCCAPSTD 383
           PEN FC + T G CC P  D
Sbjct: 166 PENGFC-ETTTGFCCVPGVD 184


>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 836 HASKANVVDKCIKMKRVKCNKVRTVTEIVNSD-EKIQKTYELAE 708
           HA     +   +    V+C   RTVT IVN+D  K+ K + L E
Sbjct: 29  HALCHKCITAMVNNSTVECPFCRTVTNIVNNDITKLLKNFALIE 72


>Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 788 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 669
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196


>Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical
           protein F02E9.9a protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 788 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 669
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 120 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 158


>Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 788 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 669
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 376 IDGLSTEHNSTPSFSVNKMGSPGML 450
           I  L T H STPS    ++ SPGM+
Sbjct: 222 ISDLRTLHGSTPSTGTPRLSSPGMV 246


>AF125964-5|AAP13765.1|  722|Caenorhabditis elegans Hypothetical
           protein W03G1.6b protein.
          Length = 722

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 21/99 (21%), Positives = 44/99 (44%)
 Frame = -2

Query: 530 FIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSREF 351
           ++ + ++ L+    N ME ++    +++    P     N   +LCS   P+I   L    
Sbjct: 315 YMTSTYYALLHRKRNGMEIILPMVRNSTNTAPP-----NVQNILCS---PTIHASLENNL 366

Query: 350 DTEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNK 234
           D   L + ++D  ++  +    A  +KN   SD+  S++
Sbjct: 367 DKSGLEDDDSDPSSISSSSDISARLKKNCVVSDESSSSR 405


>AF125964-2|AAD14754.1|  726|Caenorhabditis elegans Hypothetical
           protein W03G1.6a protein.
          Length = 726

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 21/99 (21%), Positives = 44/99 (44%)
 Frame = -2

Query: 530 FIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSREF 351
           ++ + ++ L+    N ME ++    +++    P     N   +LCS   P+I   L    
Sbjct: 315 YMTSTYYALLHRKRNGMEIILPMVRNSTNTAPP-----NVQNILCS---PTIHASLENNL 366

Query: 350 DTEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNK 234
           D   L + ++D  ++  +    A  +KN   SD+  S++
Sbjct: 367 DKSGLEDDDSDPSSISSSSDISARLKKNCVVSDESSSSR 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,559,698
Number of Sequences: 27780
Number of extensions: 378716
Number of successful extensions: 1147
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)