Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18l06
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    25   0.66 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    25   0.66 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   8.2  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 596 EELTRTCSIYNITIDRIGNLFL*CM*SFVFFLPKVFIFKF 477
           E    TCS   +T D    +F+ C+  + + +P +FI  F
Sbjct: 200 EGFLTTCSFDFLTDDEDTKVFVTCIFIWAYVIPLIFIILF 239


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 596 EELTRTCSIYNITIDRIGNLFL*CM*SFVFFLPKVFIFKF 477
           E    TCS   +T D    +F+ C+  + + +P +FI  F
Sbjct: 200 EGFLTTCSFDFLTDDEDTKVFVTCIFIWAYVIPLIFIILF 239


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 799 LDRNIVHIIEKSCGL 755
           LD + VHII+  CG+
Sbjct: 271 LDTSKVHIIDSICGI 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,931
Number of Sequences: 438
Number of extensions: 5247
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)