Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18k19
         (253 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   0.59 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   0.59 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   4.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   4.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   4.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   5.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   7.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    19   7.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   7.3  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    19   9.6  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 0.59
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 2   IAVGYNIVFE*--TIFLQSKSMLSLINSIHKNVDE 100
           I   +N +FE     FL+ +  L +IN+I KN+ +
Sbjct: 387 ILYDFNDIFEKDQASFLERERFLGIINNIFKNMSQ 421


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 0.59
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 2   IAVGYNIVFE*--TIFLQSKSMLSLINSIHKNVDE 100
           I   +N +FE     FL+ +  L +IN+I KN+ +
Sbjct: 387 ILYDFNDIFEKDQASFLERERFLGIINNIFKNMSQ 421


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 215 SHLKNAKLLTLVTVYNNST 159
           +HLKNAK L ++   + +T
Sbjct: 364 NHLKNAKYLDVIERNSGAT 382


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 215 SHLKNAKLLTLVTVYNNST 159
           +HLKNAK L ++   + +T
Sbjct: 364 NHLKNAKYLDVIERNSGAT 382


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 215 SHLKNAKLLTLVTVYNNST 159
           +HLKNAK L ++   + +T
Sbjct: 364 NHLKNAKYLDVIERNSGAT 382


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 168 QFYSRTSTNVRSVFASLD*VSLFSSTFL*IELIKL 64
           + Y     NV  ++A +   +  SST+   EL+K+
Sbjct: 263 KIYMSRHENVSILYADIVGFTAISSTYSASELVKI 297


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 182  PRLTISHSSND 214
            PRLT++H+  D
Sbjct: 1292 PRLTVNHAYRD 1302


>AF023666-1|AAC14552.1|  363|Apis mellifera
          sn-glycerol-3-phosphate dehydrogenase protein.
          Length = 363

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +2

Query: 44 LQSKSMLSLINSIHKNV 94
          +  K +  +IN  H+NV
Sbjct: 46 INGKKLTEIINETHENV 62


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -3

Query: 215 SHLKNAKLLTLVTVYNNSTVELQLMSDLFSLHWIRFLYFRL 93
           + + N+K L  +     ST + Q   +   L  +RF  F L
Sbjct: 571 TEVSNSKKLDRLDSLRGSTTDSQTEDNFGPLSNVRFAVFAL 611


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -2

Query: 219 LKSFEECEIVNLGYCI*QFYSRTSTNVRSVFASLD*VSLFSSTF 88
           + SF+    VN+ Y I  + ++   + R  F+  + V   S  F
Sbjct: 69  IASFDAISEVNMDYTITMYLNQYWKDERLAFSQEEEVLTLSGDF 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,668
Number of Sequences: 438
Number of extensions: 992
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4527252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)