Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18k03
         (365 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    42   2e-06
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   2.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   4.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   6.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   8.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   8.0  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    20   8.0  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    20   8.0  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 41.9 bits (94), Expect = 2e-06
 Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
 Frame = -1

Query: 338 GIFVDLLGWGTTVQGGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAG 159
           G  V +LGWG T   G +S    H L+    N     E YK +  ++  N  CA    A 
Sbjct: 289 GSDVTVLGWGHTSFNGMLS----HILQKTTLNMLTQVECYKYYGNIMV-NAMCA---YAK 340

Query: 158 GRDYDNTDLGAPAFFQN------ALVGIVSFGKSNANDIYPVVLTSISSFTEWIL 12
           G+D    D G P  +QN        +GI+S+G       YP   T + S+ +WI+
Sbjct: 341 GKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAECGK--YPNGNTKVGSYIDWIV 393


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 122 QGHPSQYCRSRGHQP 166
           Q HPSQY   RG  P
Sbjct: 320 QHHPSQYHPHRGSSP 334


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +2

Query: 65  HWHCSFQKIRCLLAHFGRRQGHPSQYCRSRGHQPG 169
           +W C+ +K        G+ +GH     R RG   G
Sbjct: 65  YWQCNDKKTDIEETGRGKGRGHGKGGSRGRGGNRG 99


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 360 TRCRNTPGYF 331
           T CR  PGYF
Sbjct: 294 TECRCDPGYF 303


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +2

Query: 113 GRRQGHPSQYCRSRGHQPGPN 175
           G R   PS      GH P PN
Sbjct: 109 GYRSASPSPGMGHMGHTPTPN 129


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 203 RDHDPCTVPCSF 238
           R+HDP   P SF
Sbjct: 400 REHDPAKFPPSF 411


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 27   ERTDAGEY 50
            +RTDAGEY
Sbjct: 1337 DRTDAGEY 1344


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +2

Query: 176 RRRICYQSRRDHDPCTVPCSFLCWSQ*VRACGG 274
           RRR+  QS R         +  CW+   +  GG
Sbjct: 237 RRRMMMQSGRAKSEILYKSTLHCWATIYKTEGG 269


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +2

Query: 176 RRRICYQSRRDHDPCTVPCSFLCWSQ*VRACGG 274
           RRR+  QS R         +  CW+   +  GG
Sbjct: 237 RRRMMMQSGRAKSEILYKSTLHCWATIYKTEGG 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,967
Number of Sequences: 438
Number of extensions: 2477
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)