Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18k02
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   132   4e-32
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    27   2.1  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    26   3.6  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    26   4.8  
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    25   8.4  
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces...    25   8.4  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    25   8.4  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  132 bits (319), Expect = 4e-32
 Identities = 65/128 (50%), Positives = 81/128 (63%)
 Frame = -2

Query: 395 YVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRXXNKQKRPRSRTL 216
           +VP P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+R    QKRPRSRTL
Sbjct: 63  FVPQPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRV--TQKRPRSRTL 120

Query: 215 TSVYXAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEH*XGHLPVCIQEANG 36
           T+V+ AILED+VFP EI+GKR R   DG + IKV LD     T+++  G       +  G
Sbjct: 121 TAVHNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTG 180

Query: 35  TRSDLRXP 12
                  P
Sbjct: 181 KNVTFEFP 188


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 278 PKPSHKTRXXNKQKRPRSRTLTSVYXAILEDLVFPAEIVGKR 153
           P  S + R  N+++  RSR   S + + LED+++    V  R
Sbjct: 49  PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 240 KEATLKDIDLCVXCYPRGLGLPC 172
           ++AT++++D C  C  RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -2

Query: 395 YVPMPKLKAFQKIQIRLVRELEKKFSGKHV 306
           ++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 102 HLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 150 DALAYDLSREDQVLEDSXVHR 212
           D L YDL R + V+ D  +H+
Sbjct: 214 DGLKYDLKRSEDVVYDLRIHK 234


>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = -2

Query: 341 RELEKKFSGKHVVFVGDRKILPKPSHKTRXXNKQKRPRSRTLTSVYXAILEDLVFPAEIV 162
           ++LEK+F G       +  + PK     +   K    RSR L   +  + E  VF     
Sbjct: 108 KDLEKQFPGYDYTACHEDPVFPKKEKIYKADYKTSIQRSRVLAEFFAKVPEK-VFAVVTH 166

Query: 161 GKRIRV 144
           G  IR+
Sbjct: 167 GVDIRL 172


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 91  VCWFLSKCTLMSCEPSNLTLMR 156
           +C FL K T  SC   NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,511
Number of Sequences: 5004
Number of extensions: 37147
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)