Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18k02
(597 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z25749-1|CAA81022.1| 194|Homo sapiens ribosomal protein S7 prot... 180 5e-45
M77233-1|AAB00969.1| 192|Homo sapiens ribosomal protein protein. 180 5e-45
BC071919-1|AAH71919.1| 194|Homo sapiens ribosomal protein S7 pr... 180 5e-45
BC061901-1|AAH61901.1| 194|Homo sapiens ribosomal protein S7 pr... 180 5e-45
BC002866-1|AAH02866.1| 194|Homo sapiens ribosomal protein S7 pr... 180 5e-45
AC108488-2|AAX82027.1| 194|Homo sapiens unknown protein. 180 5e-45
AB209386-1|BAD92623.1| 78|Homo sapiens ribosomal protein S7 va... 87 4e-17
>Z25749-1|CAA81022.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 180 bits (437), Expect = 5e-45
Identities = 83/106 (78%), Positives = 97/106 (91%)
Frame = -2
Query: 395 YVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRXXNKQKRPRSRTL 216
+VP+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTL
Sbjct: 63 FVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTL 122
Query: 215 TSVYXAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEH 78
T+V+ AILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ +EH
Sbjct: 123 TAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEH 168
Score = 70.5 bits (165), Expect = 4e-12
Identities = 37/58 (63%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Frame = -1
Query: 567 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIEL-HNKKSIIM 397
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+II+
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIII 62
Score = 35.9 bits (79), Expect = 0.11
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3
Query: 70 DTFQSVYKKLTGREVTFEXPE 8
+TF VYKKLTG++V FE PE
Sbjct: 171 ETFSGVYKKLTGKDVNFEFPE 191
>M77233-1|AAB00969.1| 192|Homo sapiens ribosomal protein protein.
Length = 192
Score = 180 bits (437), Expect = 5e-45
Identities = 83/106 (78%), Positives = 97/106 (91%)
Frame = -2
Query: 395 YVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRXXNKQKRPRSRTL 216
+VP+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTL
Sbjct: 61 FVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTL 120
Query: 215 TSVYXAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEH 78
T+V+ AILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ +EH
Sbjct: 121 TAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEH 166
Score = 70.5 bits (165), Expect = 4e-12
Identities = 37/58 (63%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Frame = -1
Query: 567 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIEL-HNKKSIIM 397
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+II+
Sbjct: 3 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIII 60
Score = 35.9 bits (79), Expect = 0.11
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3
Query: 70 DTFQSVYKKLTGREVTFEXPE 8
+TF VYKKLTG++V FE PE
Sbjct: 169 ETFSGVYKKLTGKDVNFEFPE 189
>BC071919-1|AAH71919.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 180 bits (437), Expect = 5e-45
Identities = 83/106 (78%), Positives = 97/106 (91%)
Frame = -2
Query: 395 YVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRXXNKQKRPRSRTL 216
+VP+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTL
Sbjct: 63 FVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTL 122
Query: 215 TSVYXAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEH 78
T+V+ AILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ +EH
Sbjct: 123 TAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEH 168
Score = 70.5 bits (165), Expect = 4e-12
Identities = 37/58 (63%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Frame = -1
Query: 567 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIEL-HNKKSIIM 397
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+II+
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIII 62
Score = 35.9 bits (79), Expect = 0.11
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3
Query: 70 DTFQSVYKKLTGREVTFEXPE 8
+TF VYKKLTG++V FE PE
Sbjct: 171 ETFSGVYKKLTGKDVNFEFPE 191
>BC061901-1|AAH61901.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 180 bits (437), Expect = 5e-45
Identities = 83/106 (78%), Positives = 97/106 (91%)
Frame = -2
Query: 395 YVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRXXNKQKRPRSRTL 216
+VP+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTL
Sbjct: 63 FVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTL 122
Query: 215 TSVYXAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEH 78
T+V+ AILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ +EH
Sbjct: 123 TAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEH 168
Score = 70.5 bits (165), Expect = 4e-12
Identities = 37/58 (63%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Frame = -1
Query: 567 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIEL-HNKKSIIM 397
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+II+
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIII 62
Score = 35.9 bits (79), Expect = 0.11
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3
Query: 70 DTFQSVYKKLTGREVTFEXPE 8
+TF VYKKLTG++V FE PE
Sbjct: 171 ETFSGVYKKLTGKDVNFEFPE 191
>BC002866-1|AAH02866.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 180 bits (437), Expect = 5e-45
Identities = 83/106 (78%), Positives = 97/106 (91%)
Frame = -2
Query: 395 YVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRXXNKQKRPRSRTL 216
+VP+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTL
Sbjct: 63 FVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTL 122
Query: 215 TSVYXAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEH 78
T+V+ AILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ +EH
Sbjct: 123 TAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEH 168
Score = 70.5 bits (165), Expect = 4e-12
Identities = 37/58 (63%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Frame = -1
Query: 567 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIEL-HNKKSIIM 397
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+II+
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIII 62
Score = 35.9 bits (79), Expect = 0.11
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3
Query: 70 DTFQSVYKKLTGREVTFEXPE 8
+TF VYKKLTG++V FE PE
Sbjct: 171 ETFSGVYKKLTGKDVNFEFPE 191
>AC108488-2|AAX82027.1| 194|Homo sapiens unknown protein.
Length = 194
Score = 180 bits (437), Expect = 5e-45
Identities = 83/106 (78%), Positives = 97/106 (91%)
Frame = -2
Query: 395 YVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRXXNKQKRPRSRTL 216
+VP+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTL
Sbjct: 63 FVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTL 122
Query: 215 TSVYXAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEH 78
T+V+ AILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ +EH
Sbjct: 123 TAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEH 168
Score = 70.5 bits (165), Expect = 4e-12
Identities = 37/58 (63%), Positives = 46/58 (79%), Gaps = 1/58 (1%)
Frame = -1
Query: 567 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIEL-HNKKSIIM 397
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+II+
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIII 62
Score = 35.9 bits (79), Expect = 0.11
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3
Query: 70 DTFQSVYKKLTGREVTFEXPE 8
+TF VYKKLTG++V FE PE
Sbjct: 171 ETFSGVYKKLTGKDVNFEFPE 191
>AB209386-1|BAD92623.1| 78|Homo sapiens ribosomal protein S7
variant protein.
Length = 78
Score = 87.0 bits (206), Expect = 4e-17
Identities = 41/50 (82%), Positives = 46/50 (92%)
Frame = -2
Query: 227 SRTLTSVYXAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEH 78
SRTLT+V+ AILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ +EH
Sbjct: 10 SRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEH 59
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,367,623
Number of Sequences: 237096
Number of extensions: 1464836
Number of successful extensions: 2769
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2769
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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