Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18k02
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    26   0.32 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.3  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   4.0  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   4.0  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   4.0  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   4.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.9  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               21   9.2  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 531 DSFETSISQALVELETNSDLKAQLRE 454
           ++  T++S AL EL  N D++ +LRE
Sbjct: 307 ETSSTTMSNALYELALNQDVQKKLRE 332


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = -2

Query: 218 LTSVYXAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTT 87
           L S Y  ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMT 76


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = -2

Query: 218 LTSVYXAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTT 87
           L S Y  ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMT 76


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 505 LRDRGLEGIRLSTARFDDLRTHLDNFTGGKS 597
           L D+G EGI+++      ++  +     GKS
Sbjct: 102 LSDKGPEGIQINATELQKIKLEIHRDLPGKS 132


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 505 LRDRGLEGIRLSTARFDDLRTHLDNFTGGKS 597
           L D+G EGI+++      ++  +     GKS
Sbjct: 102 LSDKGPEGIQINATELQKIKLEIHRDLPGKS 132


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 505 LRDRGLEGIRLSTARFDDLRTHLDNFTGGKS 597
           L D+G EGI+++      ++  +     GKS
Sbjct: 102 LSDKGPEGIQINATELQKIKLEIHRDLPGKS 132


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 505 LRDRGLEGIRLSTARFDDLRTHLDNFTGGKS 597
           L D+G EGI+++      ++  +     GKS
Sbjct: 102 LSDKGPEGIQINATELQKIKLEIHRDLPGKS 132


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 152 IRVKLDGSQLIKVHLDKNQQTT 87
           +++KL  SQLI V+L KNQ  T
Sbjct: 52  VKIKLKLSQLIDVNL-KNQIMT 72


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 110 LDKNQQTTIEH*XGHLPVCIQEA 42
           LDKN +  ++    HLP  +Q++
Sbjct: 69  LDKNAEVDVQKALRHLPRSMQDS 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,632
Number of Sequences: 438
Number of extensions: 2355
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)