Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18j21
         (872 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.69 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.91 
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    23   3.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   3.7  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   4.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   4.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   4.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   8.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   8.5  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = -1

Query: 290 LVNAISPAYPLGNLHWEG--IEREATSDNVVIGVPTLEDLGVTLTHMEDQVP 141
           L+    P   +  L W    I REATSD V +G+ T+  L          +P
Sbjct: 248 LIQVYVPCVLIVVLSWVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLP 299



 Score = 25.0 bits (52), Expect = 0.91
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 145 TWSSMCVKVTPKSSRVGTPITTLSEVASLSIPSQ*RFP 258
           +W S  +     S RVG  ITT+  ++++S+ S+   P
Sbjct: 262 SWVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLP 299


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.0 bits (52), Expect = 0.91
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 290 LVNAISPAYPLGNLHWEG--IEREATSDNVVIGVPTL 186
           L+    P   L  L W    + REAT+D V +G+ T+
Sbjct: 217 LIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTV 253


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 257 GNLHWEGIEREATSD 213
           G + WEG+E+E   D
Sbjct: 100 GGIFWEGLEKEVGDD 114


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 41  KQFKLSKLVEGLVSGTLQADP 103
           K F L  +V  L+SG  Q DP
Sbjct: 108 KMFILPLIVSSLISGMAQLDP 128


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 851 EIMKXKNFKYNDVHVDGVRRI 789
           E  +  +++ ND+H +GV+ I
Sbjct: 281 EQFRTSDYQQNDIHYEGVQNI 301


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 851 EIMKXKNFKYNDVHVDGVRRI 789
           E  +  +++ ND+H +GV+ I
Sbjct: 281 EQFRTSDYQQNDIHYEGVQNI 301


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 851 EIMKXKNFKYNDVHVDGVRRI 789
           E  +  +++ ND+H +GV+ I
Sbjct: 281 EQFRTSDYQQNDIHYEGVQNI 301


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 493 CRTSLRVS*TPRATTTLNVKSTKPLGQNATYLPI 392
           C T+ +       TTT+N  +T  +  + T +PI
Sbjct: 823 CVTTEQSVVVTNVTTTINTPTTSVISMSGTTVPI 856


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 665 PNTCLFSKQTVSSGQE 712
           PNTC     +VS+G+E
Sbjct: 592 PNTCKVIASSVSAGEE 607


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 183 GFGRHLDAHGRPG 145
           G+GRHL  H + G
Sbjct: 209 GYGRHLPGHAQMG 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,227
Number of Sequences: 438
Number of extensions: 5959
Number of successful extensions: 20
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)