Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18j14
         (853 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.67 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.67 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   4.7  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 831 RYNYLPFYTYKYLHFV 784
           R++ LP+Y YKYL+ +
Sbjct: 314 RFSSLPYYKYKYLNVI 329


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 831 RYNYLPFYTYKYLHFV 784
           R++ LP+Y YKYL+ +
Sbjct: 314 RFSSLPYYKYKYLNVI 329


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 161 GSYLNLFLVMVII*KEVQNNRQYYLRV*NTYLFDVT-NLCTKEC 289
           GS++  ++  VI  +E +   + Y     TYLFD+  N   ++C
Sbjct: 519 GSFVTQYVGEVITNEEAEKRGKEYDAAGRTYLFDLDYNESEEQC 562


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 128 ITKIQLSIFLTGSYLNLFLVMVII*K-EVQNNRQYYL 235
           +T I + IF+TG + N+    VII    +Q    YYL
Sbjct: 43  LTIIYMIIFVTGIFGNITTCTVIIKNPAMQTATNYYL 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,120
Number of Sequences: 438
Number of extensions: 3987
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)