Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18j07
(876 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC039295-1|AAH39295.1| 530|Homo sapiens family with sequence si... 37 0.083
AC005037-1|AAY14726.1| 419|Homo sapiens unknown protein. 37 0.083
BC018710-1|AAH18710.1| 521|Homo sapiens family with sequence si... 36 0.19
AK056319-1|BAB71148.1| 521|Homo sapiens protein ( Homo sapiens ... 36 0.19
AC005682-1|AAS01991.1| 312|Homo sapiens unknown protein. 36 0.19
AB030241-1|BAB39849.1| 521|Homo sapiens DRCTNNB1A protein. 36 0.19
CR456852-1|CAG33133.1| 472|Homo sapiens SELENBP1 protein. 31 7.2
BC009084-1|AAH09084.1| 472|Homo sapiens selenium binding protei... 31 7.2
AL391069-29|CAO72167.1| 201|Homo sapiens selenium binding prote... 31 7.2
AL391069-28|CAO72166.1| 295|Homo sapiens selenium binding prote... 31 7.2
AL391069-27|CAH70328.1| 472|Homo sapiens selenium binding prote... 31 7.2
AL391069-26|CAO72165.1| 126|Homo sapiens selenium binding prote... 31 7.2
AL391069-25|CAO72164.1| 349|Homo sapiens selenium binding prote... 31 7.2
BC039071-1|AAH39071.1| 471|Homo sapiens HHAT protein protein. 30 9.6
>BC039295-1|AAH39295.1| 530|Homo sapiens family with sequence
similarity 126, member B protein.
Length = 530
Score = 37.1 bits (82), Expect = 0.083
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = -1
Query: 870 RAQYELFPEVMIVTSAVINSLKNNASGQPFDGPMGISVALSPATTTVTMSKSMITNASFR 691
RAQ ELF + ++V +A+ NSL +A +G + V ++P T +S++ IT AS R
Sbjct: 266 RAQLELFSQPLLVANAMKNSLPFDAPDSTQEGQKVLKVEVTP--TVPRISRTAITTASIR 323
>AC005037-1|AAY14726.1| 419|Homo sapiens unknown protein.
Length = 419
Score = 37.1 bits (82), Expect = 0.083
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = -1
Query: 870 RAQYELFPEVMIVTSAVINSLKNNASGQPFDGPMGISVALSPATTTVTMSKSMITNASFR 691
RAQ ELF + ++V +A+ NSL +A +G + V ++P T +S++ IT AS R
Sbjct: 155 RAQLELFSQPLLVANAMKNSLPFDAPDSTQEGQKVLKVEVTP--TVPRISRTAITTASIR 212
>BC018710-1|AAH18710.1| 521|Homo sapiens family with sequence
similarity 126, member A protein.
Length = 521
Score = 35.9 bits (79), Expect = 0.19
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = -1
Query: 870 RAQYELFPEVMIVTSAVINSLKNNASGQPFDGPMGISVALSPATTTVTMSKSMITNASFR 691
RAQ EL+PE ++V +A+ SL + +G I V ++P T+ +S++ +T+ S R
Sbjct: 266 RAQLELYPEPLLVANAIKASLPHGPMKSNKEGTRCIQVEITP--TSSRISRNAVTSMSIR 323
>AK056319-1|BAB71148.1| 521|Homo sapiens protein ( Homo sapiens
cDNA FLJ31757 fis, clone NT2RI2007572. ).
Length = 521
Score = 35.9 bits (79), Expect = 0.19
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = -1
Query: 870 RAQYELFPEVMIVTSAVINSLKNNASGQPFDGPMGISVALSPATTTVTMSKSMITNASFR 691
RAQ EL+PE ++V +A+ SL + +G I V ++P T+ +S++ +T+ S R
Sbjct: 266 RAQLELYPEPLLVANAIKASLPHGPMKSNKEGTRCIQVEITP--TSSRISRNAVTSMSIR 323
>AC005682-1|AAS01991.1| 312|Homo sapiens unknown protein.
Length = 312
Score = 35.9 bits (79), Expect = 0.19
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = -1
Query: 870 RAQYELFPEVMIVTSAVINSLKNNASGQPFDGPMGISVALSPATTTVTMSKSMITNASFR 691
RAQ EL+PE ++V +A+ SL + +G I V ++P T+ +S++ +T+ S R
Sbjct: 57 RAQLELYPEPLLVANAIKASLPHGPMKSNKEGTRCIQVEITP--TSSRISRNAVTSMSIR 114
>AB030241-1|BAB39849.1| 521|Homo sapiens DRCTNNB1A protein.
Length = 521
Score = 35.9 bits (79), Expect = 0.19
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = -1
Query: 870 RAQYELFPEVMIVTSAVINSLKNNASGQPFDGPMGISVALSPATTTVTMSKSMITNASFR 691
RAQ EL+PE ++V +A+ SL + +G I V ++P T+ +S++ +T+ S R
Sbjct: 266 RAQLELYPEPLLVANAIKASLPHGPMKSNKEGTRCIQVEITP--TSSRISRNAVTSMSIR 323
>CR456852-1|CAG33133.1| 472|Homo sapiens SELENBP1 protein.
Length = 472
Score = 30.7 bits (66), Expect = 7.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 746 QQLQRLPCPNL**QMHHSALRNCQTIF 666
Q + RLP PNL ++HHS C + F
Sbjct: 58 QVIHRLPMPNLKDELHHSGWNTCSSCF 84
>BC009084-1|AAH09084.1| 472|Homo sapiens selenium binding protein 1
protein.
Length = 472
Score = 30.7 bits (66), Expect = 7.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 746 QQLQRLPCPNL**QMHHSALRNCQTIF 666
Q + RLP PNL ++HHS C + F
Sbjct: 58 QVIHRLPMPNLKDELHHSGWNTCSSCF 84
>AL391069-29|CAO72167.1| 201|Homo sapiens selenium binding protein
1 protein.
Length = 201
Score = 30.7 bits (66), Expect = 7.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 746 QQLQRLPCPNL**QMHHSALRNCQTIF 666
Q + RLP PNL ++HHS C + F
Sbjct: 58 QVIHRLPMPNLKDELHHSGWNTCSSCF 84
>AL391069-28|CAO72166.1| 295|Homo sapiens selenium binding protein
1 protein.
Length = 295
Score = 30.7 bits (66), Expect = 7.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 746 QQLQRLPCPNL**QMHHSALRNCQTIF 666
Q + RLP PNL ++HHS C + F
Sbjct: 42 QVIHRLPMPNLKDELHHSGWNTCSSCF 68
>AL391069-27|CAH70328.1| 472|Homo sapiens selenium binding protein
1 protein.
Length = 472
Score = 30.7 bits (66), Expect = 7.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 746 QQLQRLPCPNL**QMHHSALRNCQTIF 666
Q + RLP PNL ++HHS C + F
Sbjct: 58 QVIHRLPMPNLKDELHHSGWNTCSSCF 84
>AL391069-26|CAO72165.1| 126|Homo sapiens selenium binding protein
1 protein.
Length = 126
Score = 30.7 bits (66), Expect = 7.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 746 QQLQRLPCPNL**QMHHSALRNCQTIF 666
Q + RLP PNL ++HHS C + F
Sbjct: 85 QVIHRLPMPNLKDELHHSGWNTCSSCF 111
>AL391069-25|CAO72164.1| 349|Homo sapiens selenium binding protein
1 protein.
Length = 349
Score = 30.7 bits (66), Expect = 7.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 746 QQLQRLPCPNL**QMHHSALRNCQTIF 666
Q + RLP PNL ++HHS C + F
Sbjct: 100 QVIHRLPMPNLKDELHHSGWNTCSSCF 126
>BC039071-1|AAH39071.1| 471|Homo sapiens HHAT protein protein.
Length = 471
Score = 30.3 bits (65), Expect = 9.6
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +3
Query: 369 WFQQS--YLLFFVSRPPCLHCLH*ENSICLLRIPSVSLSFRYPY-L*YPLFFCLILGKKI 539
W+ ++ YLL F CL+ + +C ++P+ S S+ +P+ L Y ++ ++ I
Sbjct: 159 WYTENEYYLLQFTLTVRCLYYTNFSLELCWQQLPAASTSYSFPWMLAYVFYYPVLHNGPI 218
Query: 540 VWLSNF 557
+ S F
Sbjct: 219 LSFSEF 224
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,212,681
Number of Sequences: 237096
Number of extensions: 2409348
Number of successful extensions: 5163
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5162
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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