Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18j02
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    30   0.44 
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    30   0.44 
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   3.1  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    27   4.1  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   5.4  

>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = +3

Query: 102  MLSSLYKRVFYIFLQRILG-SFHSTVGVTLTAKQCLI*I*ALFCLVTFDAFTRDLVVIYR 278
            M+SSL + VF  F   I+G ++    G  L A   L+ +  + CL T   F+   V   R
Sbjct: 894  MISSLIEEVFIAFTMAIIGIAWSFATGWRLAA--VLVAVSPILCL-TSRMFSYIYVSTER 950

Query: 279  WGQTIICNETSCLNKHVI 332
              Q ++ + TS L+K ++
Sbjct: 951  MCQDVVISTTSILHKTIV 968


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
 Frame = +3

Query: 33   RFEIIVASFFFYYSVIKSKILNFMLSSLYKRVFYIFLQRILGSFHSTVGVTLTAKQCLI* 212
            RF+ ++   F +      ++  ++L + YK  F+  +Q I+  F    G +L     L  
Sbjct: 1278 RFKFLIKLLFCHGRWSYVRLSKYILGTFYKEQFFFLMQAIMQPFVGYTGQSLYESWGLTC 1337

Query: 213  I*ALF---CLVTFDAFTRDL 263
               LF   C++    F +DL
Sbjct: 1338 FNTLFSSLCVIGLGIFEKDL 1357


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 21  TGAIRFEIIVASFFFYYSVIKSKILNFMLSSL 116
           +G + F +   S FF YS + SKILN ++  L
Sbjct: 348 SGTVYFSVF-NSLFFMYSKLTSKILNTLVGGL 378


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 681 SAVDSEMRFKYPIAPAASVGPSIPSVP 761
           SA  +EM + +PI+PA S   S PS P
Sbjct: 238 SAFQAEMPY-FPISPAISCASSCPSTP 263


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 661 YLANNDTYNFFKLFKNDHLHVFTGHTNTN 575
           Y+ +ND  N +  +++ H+H F    NT+
Sbjct: 321 YINDNDPSNSYSSYQHSHVHDFIHKNNTH 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,099,195
Number of Sequences: 5004
Number of extensions: 62661
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)