Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18i19
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   3.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   5.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   7.7  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 702 QDLVQAGYMGRKSGKGFYVYEKGSKNREVNHGAIKILKDKYALEPRG 562
           Q++    Y   KSGKGF ++ +  KN    +     L + Y L   G
Sbjct: 166 QNIAVIEYRIPKSGKGFSLFARFLKNPRPCNVLATSLTEPYTLRNYG 212


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +3

Query: 6   QYLIEISNKLYLIINSLYN 62
           +Y++ +SN++  IIN+ +N
Sbjct: 379 EYMLALSNRMQKIINNDFN 397


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 401 HLKGPPVNGGKPRPKTAPTSP 463
           H   PP    KP+ KT PTSP
Sbjct: 246 HATKPP----KPQTKTKPTSP 262


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 643  IHIETFAGLASHVSSLH*VLHDTQ---VSSANAIT 738
            I + T AGL +   S H VLH  Q    SSA+ +T
Sbjct: 923  IQVSTSAGLQTIRLSGHSVLHSAQSVVASSASNVT 957


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
 Frame = +2

Query: 407  KGPPVNGGKP---RPKTAPT 457
            +GP  +GG+P   RP+  PT
Sbjct: 1355 RGPSASGGRPVPERPERVPT 1374


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/19 (31%), Positives = 15/19 (78%)
 Frame = +3

Query: 6   QYLIEISNKLYLIINSLYN 62
           +Y++ +SN++  I+N+ +N
Sbjct: 377 EYMLALSNRMQKIVNNDFN 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,922
Number of Sequences: 438
Number of extensions: 5302
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)