Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18h11
         (866 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          29   0.056
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    27   0.22 
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    27   0.22 
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    27   0.22 
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    26   0.39 
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    26   0.39 
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    23   4.8  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    23   4.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.4  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   8.4  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 29.1 bits (62), Expect = 0.056
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -1

Query: 638 ESYHYYMWNEFFKHIDIEPSNAHVLDGNASDLVLE-CQR 525
           ES   Y W     HID +P +    +  A  +VLE CQR
Sbjct: 183 ESNENYNWEHKETHIDWQPEDEECTEATAGAVVLETCQR 221


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 679 KVVTYLKDNFPSLWNSINRLYMP 747
           KV+ +L +N P LW+S+   Y P
Sbjct: 89  KVIKFLVENKPELWDSLANKYDP 111


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 679 KVVTYLKDNFPSLWNSINRLYMP 747
           KV+ +L +N P LW+S+   Y P
Sbjct: 89  KVIKFLVENKPELWDSLANKYDP 111


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 679 KVVTYLKDNFPSLWNSINRLYMP 747
           KV+ +L +N P LW+S+   Y P
Sbjct: 89  KVIKFLVENKPELWDSLANKYDP 111


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 679 KVVTYLKDNFPSLWNSINRLYMPRG 753
           KVV +L DN P +W  +   Y P G
Sbjct: 88  KVVQFLIDNKPEIWVLLEAKYDPTG 112


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 679 KVVTYLKDNFPSLWNSINRLYMPRG 753
           KVV +L DN P +W  +   Y P G
Sbjct: 88  KVVQFLIDNKPEIWVLLEAKYDPTG 112


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 679 KVVTYLKDNFPSLWNSINRLYMPRG 753
           KVV YLK   P  W  ++  Y   G
Sbjct: 85  KVVNYLKTKRPKDWERLSAKYDSTG 109


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 679 KVVTYLKDNFPSLWNSINRLYMPRG 753
           KVV YLK   P  W  ++  Y   G
Sbjct: 85  KVVNYLKTKRPKDWERLSAKYDSTG 109


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +1

Query: 478  PMNKCTPPASCMSFSKR*HSSTKSDALPSSTCALLG 585
            P  +C PP    S     H   + +  P +T  LLG
Sbjct: 1697 PNRRCPPPPRMGSAEGLSHRGMEDEICPYATFHLLG 1732


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 165 VTHEKRLRMLLEGRHRPHVVH 227
           +T  KR    LE R R H VH
Sbjct: 90  LTKAKRFIKSLEERERKHAVH 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,340
Number of Sequences: 438
Number of extensions: 5413
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)