Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18h09
         (736 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone recepto...    31   3.2  
Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein.          30   9.9  
BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subuni...    30   9.9  
AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D receptor-inte...    30   9.9  

>AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone
            receptor-associated protein complex component TRAP220
            protein.
          Length = 1581

 Score = 31.5 bits (68), Expect = 3.2
 Identities = 24/84 (28%), Positives = 36/84 (42%)
 Frame = -2

Query: 654  GPLGADRLQGPLQNGPSSVQVQQPLRGKQGASSNNRKIHQSKLGDYNARNSTTGAQPDHK 475
            GP G D L G  Q G S+     P+  K   S    +  + K     ++ ST+G+  D  
Sbjct: 1318 GPGGEDPLDG--QMGVSTNSSSHPMSSKHNMSGGEFQGKREKSDKDKSKVSTSGSSVDSS 1375

Query: 474  QLRGESKTTFRSSSRHRIITAVNG 403
            +   ESK    +S    II+  +G
Sbjct: 1376 KKTSESKNVGSTSVAKIIISKHDG 1399


>Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein.
          Length = 1566

 Score = 29.9 bits (64), Expect = 9.9
 Identities = 23/84 (27%), Positives = 35/84 (41%)
 Frame = -2

Query: 654  GPLGADRLQGPLQNGPSSVQVQQPLRGKQGASSNNRKIHQSKLGDYNARNSTTGAQPDHK 475
            GP G D L G  Q G S+     P+  K   S    +  + K     ++ ST+G+  D  
Sbjct: 1303 GPGGEDPLDG--QMGVSTNSSSHPMSSKHNMSGGEFQGKREKSDKDKSKVSTSGSSVDSS 1360

Query: 474  QLRGESKTTFRSSSRHRIITAVNG 403
            +   ESK    +     II+  +G
Sbjct: 1361 KKTSESKNVGSTGVAKIIISKHDG 1384


>BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subunit 1
            protein.
          Length = 1581

 Score = 29.9 bits (64), Expect = 9.9
 Identities = 23/84 (27%), Positives = 35/84 (41%)
 Frame = -2

Query: 654  GPLGADRLQGPLQNGPSSVQVQQPLRGKQGASSNNRKIHQSKLGDYNARNSTTGAQPDHK 475
            GP G D L G  Q G S+     P+  K   S    +  + K     ++ ST+G+  D  
Sbjct: 1318 GPGGEDPLDG--QMGVSTNSSSHPMSSKHNMSGGEFQGKREKSDKDKSKVSTSGSSVDSS 1375

Query: 474  QLRGESKTTFRSSSRHRIITAVNG 403
            +   ESK    +     II+  +G
Sbjct: 1376 KKTSESKNVGSTGVAKIIISKHDG 1399


>AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D
            receptor-interacting protein complex component DRIP205
            protein.
          Length = 1566

 Score = 29.9 bits (64), Expect = 9.9
 Identities = 23/84 (27%), Positives = 35/84 (41%)
 Frame = -2

Query: 654  GPLGADRLQGPLQNGPSSVQVQQPLRGKQGASSNNRKIHQSKLGDYNARNSTTGAQPDHK 475
            GP G D L G  Q G S+     P+  K   S    +  + K     ++ ST+G+  D  
Sbjct: 1303 GPGGEDPLDG--QMGVSTNSSSHPMSSKHNMSGGEFQGKREKSDKDKSKVSTSGSSVDSS 1360

Query: 474  QLRGESKTTFRSSSRHRIITAVNG 403
            +   ESK    +     II+  +G
Sbjct: 1361 KKTSESKNVGSTGVAKIIISKHDG 1384


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,492,054
Number of Sequences: 237096
Number of extensions: 1552224
Number of successful extensions: 3163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3163
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)