Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18h09
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    45   6e-07
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    26   0.42 
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    26   0.42 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   9.1  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    21   9.1  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 45.2 bits (102), Expect = 6e-07
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
 Frame = -3

Query: 734 PIRGNGPAKIKITNLRIV--VTYDFTTVAGHWVLTGYKDHYKMDRAQFK--FNNLFGGNK 567
           P+RG G + I + +L+    +  +     G   L   K   K + A+ K  F NLF GNK
Sbjct: 141 PVRGAGKSNITMYDLKSHNDIYCEKYEKNGETYLRIKKHAVKFNPAKVKLRFENLFDGNK 200

Query: 566 ELAQTTEKFTNQNWEIIMQEIAPPALNQIISSCVEKV-KQLFGAVPATELLRP 411
           EL +   +F N+N E++ +E+   A  +  S    K+  ++F  VP  ++  P
Sbjct: 201 ELGEQMNRFINENSELLFKEL-QAAYEETFSLVFTKIDNEIFNRVPFDKIFPP 252


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 570 QGASSNNRKIHQSKLGDYNARNSTTGAQPDHKQLRGESKTTFRSSS 433
           Q  S NN +     LGD N  N+    +P  +  +   + TF SSS
Sbjct: 7   QFVSQNNFEEFAKVLGDQNLVNTVLQPRPSFELSKNGDEWTFTSSS 52


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 570 QGASSNNRKIHQSKLGDYNARNSTTGAQPDHKQLRGESKTTFRSSS 433
           Q  S NN +     LGD N  N+    +P  +  +   + TF SSS
Sbjct: 9   QFVSQNNFEEFAKVLGDQNLVNTVLQPRPSFELSKNGDEWTFTSSS 54


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 454 NNFSEQFPPPNYYG 413
           +++ EQ P P YYG
Sbjct: 332 SHYIEQIPAPVYYG 345


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 669 LHDSRGPLGADRLQGPLQNGPS 604
           L D R P G   +QG  +N  S
Sbjct: 25  LFDKRAPTGHQEMQGKEKNSAS 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,412
Number of Sequences: 438
Number of extensions: 3423
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)