Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18h08
         (284 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   1.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   3.9  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   5.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   6.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    19   9.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   9.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    19   9.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                19   9.0  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 192 SAANAIALGAMTVVAVGTFLFTWWQ 118
           S  N I LG++  +  G FLF  W+
Sbjct: 287 SQINGI-LGSLVAITGGCFLFRAWE 310


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 151 HNRHRA*CYSISSGCVAALRIRILGHR 231
           H R     + IS+GCV+ +  RI  +R
Sbjct: 18  HQRCSRDWFRISAGCVSRISNRISRNR 44


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 152 WRSEHFSLLGG 120
           W SEHF   GG
Sbjct: 333 WNSEHFFEYGG 343


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 210 N*NSWSSQNGNLFVATKNDNDCD 278
           N N+ ++ NGN   A+ N+N+ D
Sbjct: 249 NNNNGANDNGNGNGASNNNNNGD 271


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 62  YYLRRFAP*AP 94
           YYL +FAP  P
Sbjct: 182 YYLHQFAPEQP 192


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -3

Query: 129  TWWQEREVPPP 97
            T W++++ PPP
Sbjct: 1348 TAWRQQQPPPP 1358


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 62  YYLRRFAP*AP 94
           YYL +FAP  P
Sbjct: 182 YYLHQFAPEQP 192


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 279 HHNHCRFSLPQINCH 235
           HH+H   +L +  CH
Sbjct: 286 HHSHLSSALGRSACH 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,813
Number of Sequences: 438
Number of extensions: 1722
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)