Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18h05
(844 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 26 0.38
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 25 0.87
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 25 1.2
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 25 1.2
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 25 1.2
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 25 1.2
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 23 3.5
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 6.2
S76957-1|AAB33932.1| 169|Apis mellifera olfactory receptor prot... 22 8.1
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 22 8.1
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 22 8.1
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 26.2 bits (55), Expect = 0.38
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -2
Query: 378 NVFAKFNI-SFLIRNCLIYINLISPCFSLNPYLIHL 274
NVFAK ++ +FL++N + + + F +NP+ HL
Sbjct: 589 NVFAKGDMEAFLVKNIIPKLQIALSEFVINPHQQHL 624
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 25.0 bits (52), Expect = 0.87
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -2
Query: 381 PNVFAKFNISFLIRNCLIY-INLISPCFSLN 292
P++F FNI+ L R L Y +NLI PC S++
Sbjct: 223 PDIF--FNIT-LRRKTLFYTVNLIVPCVSIS 250
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 24.6 bits (51), Expect = 1.2
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 443 HPSSQPDCPPEVAK*TLPITYLMFLPNLIFHF*SGTA 333
HP +A+ T P+ Y MFL H+ GT+
Sbjct: 454 HPIRVAKTIDVIARITFPVAYFMFLTFFFIHY-KGTS 489
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 24.6 bits (51), Expect = 1.2
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 443 HPSSQPDCPPEVAK*TLPITYLMFLPNLIFHF*SGTA 333
HP +A+ T P+ Y MFL H+ GT+
Sbjct: 440 HPIRVAKTIDVIARITFPVAYFMFLTFFFIHY-KGTS 475
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 24.6 bits (51), Expect = 1.2
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 443 HPSSQPDCPPEVAK*TLPITYLMFLPNLIFHF*SGTA 333
HP +A+ T P+ Y MFL H+ GT+
Sbjct: 474 HPIRVAKTIDVIARITFPVAYFMFLTFFFIHY-KGTS 509
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 24.6 bits (51), Expect = 1.2
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -3
Query: 443 HPSSQPDCPPEVAK*TLPITYLMFLPNLIFHF*SGTA 333
HP +A+ T P+ Y MFL H+ GT+
Sbjct: 423 HPIRVAKTIDVIARITFPVAYFMFLTFFFIHY-KGTS 458
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 23.0 bits (47), Expect = 3.5
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -1
Query: 613 YRPLPENIVLVMRLPLPI 560
Y+PL NI+ + ++P+P+
Sbjct: 331 YKPLYYNIINIEQIPVPV 348
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.2 bits (45), Expect = 6.2
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = -2
Query: 381 PNVFAKFNISFLIRNCLIYINLISPCFSLN 292
P + FNI+ + +NLI PC ++
Sbjct: 226 PYLDITFNITMRRKTLFYTVNLIIPCMGIS 255
>S76957-1|AAB33932.1| 169|Apis mellifera olfactory receptor
protein.
Length = 169
Score = 21.8 bits (44), Expect = 8.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 137 YLHLIHTFEIDFLSVKLNFYAYYIPI 60
Y+H TF +D V FY IP+
Sbjct: 138 YVHPSATFSLDLNKVVSVFYTAVIPM 163
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 21.8 bits (44), Expect = 8.1
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -2
Query: 363 FNISFLIRNCLIY-INLISPCFSLN 292
FNI+ L R L Y +NLI PC ++
Sbjct: 228 FNIT-LRRKTLFYTVNLIIPCVGIS 251
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 8.1
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -1
Query: 613 YRPLPENIVLVMRLPLPI 560
Y+PL NI + ++P+P+
Sbjct: 331 YKPLHYNINYIEQIPVPV 348
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,882
Number of Sequences: 438
Number of extensions: 4342
Number of successful extensions: 40
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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