Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18h04
(822 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase pr... 126 2e-31
L10430-1|AAA27731.1| 150|Apis mellifera transposase protein. 40 2e-05
L10433-1|AAA27732.1| 149|Apis mellifera transposase protein. 33 0.003
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 23 3.4
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 23 3.4
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 22 7.9
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 22 7.9
AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cycl... 22 7.9
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 22 7.9
>AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase
protein.
Length = 342
Score = 126 bits (305), Expect = 2e-31
Identities = 59/138 (42%), Positives = 85/138 (61%)
Frame = +2
Query: 347 HLKILLQKR*KCNTSREKKNCHVNGPSAVSVRVAQIWFKLF*SGNFYVKDERRSGHPITD 526
H+ + ++ K + KK C V G A+ R Q WF F SG+F +KDE+RSG P+
Sbjct: 10 HILLFYFRKGKNASQAHKKLCAVYGDEALKERQCQNWFDKFRSGDFSLKDEKRSGRPVEV 69
Query: 527 KMDAIFEKVEQDRHVSSYDVAEQLGIDHKTVLAHLKKTGYTKKLDIWVPHELTERNLMNR 706
D I ++ DRH ++ ++AE+L + H + HLK+ GY +KLD WVPHEL E++L R
Sbjct: 70 DDDLIKAIIDSDRHSTTREIAEKLHVSHTCIENHLKQLGYVQKLDTWVPHELKEKHLTQR 129
Query: 707 VLICDFLLRRSETDPFLK 760
+ CD L +R+E DPFLK
Sbjct: 130 INSCDLLKKRNENDPFLK 147
Score = 40.3 bits (90), Expect = 2e-05
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +1
Query: 742 NRPIFEKLITGDEKWITYDKNVRKMSW 822
N P ++LITGDEKW+ Y+ RK SW
Sbjct: 142 NDPFLKRLITGDEKWVVYNNIKRKRSW 168
Score = 30.7 bits (66), Expect = 0.017
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 342 RYI*KFYYKNGKNATQAAKKKIAMLMD 422
R+I FY++ GKNA+QA KK A+ D
Sbjct: 9 RHILLFYFRKGKNASQAHKKLCAVYGD 35
>L10430-1|AAA27731.1| 150|Apis mellifera transposase protein.
Length = 150
Score = 40.3 bits (90), Expect = 2e-05
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +1
Query: 742 NRPIFEKLITGDEKWITYDKNVRKMSW 822
N P ++LITGDEKW+ Y+ RK SW
Sbjct: 21 NDPFLKRLITGDEKWVVYNNIKRKRSW 47
Score = 34.3 bits (75), Expect = 0.001
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 686 ERNLMNRVLICDFLLRRSETDPFLK 760
E++L R+ CD L +RSE DPFLK
Sbjct: 2 EKHLTQRINSCDLLKKRSENDPFLK 26
>L10433-1|AAA27732.1| 149|Apis mellifera transposase protein.
Length = 149
Score = 33.1 bits (72), Expect = 0.003
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 686 ERNLMNRVLICDFLLRRSETDPFLK 760
E++L R+ CD L +R+E DPFLK
Sbjct: 2 EKHLTQRINSCDLLKKRNENDPFLK 26
Score = 30.3 bits (65), Expect = 0.022
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 742 NRPIFEKLITGDEKWITYDKNVRKMSW 822
N P ++ ITGDEKW+ N+++ W
Sbjct: 21 NDPFLKRPITGDEKWVV--NNIKRKRW 45
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 23.0 bits (47), Expect = 3.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 662 IWVPHELTERNLMNR 706
IW PH RN++N+
Sbjct: 177 IWTPHGWMRRNVLNK 191
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 23.0 bits (47), Expect = 3.4
Identities = 10/37 (27%), Positives = 17/37 (45%)
Frame = -3
Query: 661 IELFCVPSFFQMGQNCFVVNS*LLSYVITTDMPILLH 551
I +FC + N FVVN + + + PI ++
Sbjct: 70 IWIFCAAKSLRTPSNMFVVNLAICDFFMMIKTPIFIY 106
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.8 bits (44), Expect = 7.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 623 AHLKKTGYTKKLDIW 667
A L YTK +DIW
Sbjct: 293 ASLPPVSYTKAIDIW 307
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.8 bits (44), Expect = 7.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 623 AHLKKTGYTKKLDIW 667
A L YTK +DIW
Sbjct: 293 ASLPPVSYTKAIDIW 307
>AB193550-1|BAD66824.1| 699|Apis mellifera soluble guanylyl cyclase
alpha 1 subunit protein.
Length = 699
Score = 21.8 bits (44), Expect = 7.9
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 815 IFRTFLSYVIHFSSPVISFSKMGRFHYVVIKNHK*VHGSLGFFQ 684
+FR S V SF K +H+VV + + V +GF +
Sbjct: 273 LFRPLSSEATDLRMGVASFCKAFPWHFVVDRQLELVQLGVGFMR 316
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.8 bits (44), Expect = 7.9
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = -1
Query: 183 FITSSYILPI*CEKTFPQPII*MFYMYIVYLLDLFSAICCSYHVCITIYTVC 28
++ +SY++ +P +I + +Y V + A S H+ T+YT C
Sbjct: 811 YVDASYMIAF----AYPIMLIVVCTVYAVLTRKIPEAFNESKHIGFTMYTTC 858
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,820
Number of Sequences: 438
Number of extensions: 4570
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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