Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18h02
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    29   0.80 
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    29   1.1  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    25   9.9  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   9.9  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -3

Query: 475 LIEFISKLFKKTCIAYKSISVCILFLSNYNSLDSVMFFHYFRSGMLN 335
           L+E  SKLFK   I    +S+C + L N  S +++  F   R  +LN
Sbjct: 37  LLEADSKLFKAQRIEDTVLSICEVTLENKASENALTLFQQLRFYLLN 83


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = -3

Query: 505 NNEWRRIT*SLIEFISKLFKKTCIAYKSISVCILFLSNYNSLDSVMFF 362
           NN+W   +  LIE + + +  + + ++      LFL N+     ++ F
Sbjct: 504 NNQWSSTSRDLIESVKRFYSNSFVDFQRQEAISLFLGNFTVHGKIVVF 551


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 426 LYAIHVFLNNFDINSIKDQVIRLHSLFTFHIYSNK*YNKN 545
           L A H FL++  +NS KD ++ +  + +   Y +K Y+K+
Sbjct: 115 LEAAHRFLSSL-VNSWKDHIVSMQMISSVLKYLDKVYSKS 153


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 408 FFFFPTITPWIVLCFSIISEAV 343
           FFF+  + PWI L  + ++E +
Sbjct: 236 FFFYTLLYPWIALVSAFVAETM 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,186,006
Number of Sequences: 5004
Number of extensions: 63136
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)