Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18g02
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    33   0.039
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    33   0.068
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    30   0.48 
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    29   0.84 
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    29   0.84 
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    29   1.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   3.4  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   3.4  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    27   4.5  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   5.9  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   7.8  

>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 33.5 bits (73), Expect = 0.039
 Identities = 29/123 (23%), Positives = 56/123 (45%)
 Frame = -1

Query: 797 SNRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQELLDDYKTKSAGISPDTTHALL 618
           S +SL +  + +E +   MK +L    +L E+L +R+Q+L+ + +T    +        L
Sbjct: 565 SGQSLLDIPIEQEEQERDMKIQL----DLLEELQSRVQKLVPERQTTLQALQ----QKCL 616

Query: 617 QTAAAESEEQSDNIARDFLSGKMGVDKFLEDFEPIRKQMHIRKYKAEKMSELLRNSNQNA 438
           Q   +ES  Q+       L      +  L+ F+P+R ++H    + + +   +RN  Q  
Sbjct: 617 QDDISESLMQNSKRKDSALDTNQLFELELKKFDPLRNRLHASYRQQQLLLNEMRNVTQKL 676

Query: 437 YGN 429
             N
Sbjct: 677 KQN 679


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 32.7 bits (71), Expect = 0.068
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 443 NAYGNGATKPYLPYSNYLPSQNPQSLPYPVGPLNMPMPGMYGNH 312
           ++YGNGA+  Y   ++  PS +P S  YP      P P  Y N+
Sbjct: 289 SSYGNGASTNY--NASRPPSNHPHSSNYPSSSRRKPSPDRYSNY 330


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
 Frame = -1

Query: 773 NLGKEPELERMKAE--LQEKSELGEQLCTRIQELLDDYKTKSAGISPDTTHALLQTAAAE 600
           NL  E    ++K E  L E++ L E L T    +L      SAG   D   ++   +  E
Sbjct: 591 NLESELNSSKIKNESLLNERNLLKEMLATSRSSILSH--NSSAGNIDDKMKSI-DESTRE 647

Query: 599 SEEQSDNIARDFLSGKMGVDK----FLEDFEPIRKQMHIRKYKAEKMSELLRNSNQN 441
            E+  +    +  + +  + K     L + E IRK++   KY+ +  ++ L N+N +
Sbjct: 648 LEKNYEVYRNEMTAIQESLSKRNQDLLSEMEAIRKELENSKYQQQLSTDRLTNANND 704


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 15/57 (26%), Positives = 35/57 (61%)
 Frame = -1

Query: 749 ERMKAELQEKSELGEQLCTRIQELLDDYKTKSAGISPDTTHALLQTAAAESEEQSDN 579
           E+ K  +  ++E  E++  R+Q+ LD +  K++  SP++ +A    + +ES+ +S++
Sbjct: 520 EKKKGRVLSETEQAEKI-RRLQQQLDRFAGKTSPTSPESNNA-ANVSDSESDNESES 574


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 452 CFSTILTFSRLCTSLYAFV--YGWVQNLLEIYQHPF 553
           C   IL    +C++ Y+ +  YG++ N++ +Y H F
Sbjct: 91  CLRAILNIVTICSNSYSILVNYGFILNMVHMYVHVF 126


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 578 IARDFLSGKMGVDKFLEDFEPIRKQMHIRKYKAE 477
           IA +F   KM  DK +ED  PI+K  H+  ++AE
Sbjct: 500 IAYEF-KNKMAYDKSIEDNAPIKKFEHLPFFEAE 532


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 389 PSQNPQSLPYPVGPLNMPM 333
           PS  P+SLP P G +N PM
Sbjct: 638 PSNPPRSLPPPSGQVNAPM 656


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 755 ELERMKAELQEKSELGEQLCTRIQELLDDYKTKS 654
           +LE +K   +E+  + E L  RIQ L     TKS
Sbjct: 435 QLEHLKHNYEEEKSMNENLLVRIQTLEKQNTTKS 468


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
 Frame = -1

Query: 716 ELGEQLCTRIQELLDDYKTKSAGISPDTTHALLQTAAAESEEQSDNIA-RDFLSGKMGVD 540
           ++ EQ  T I   +   KT    + P+T            + ++  +A R   + ++G  
Sbjct: 17  DVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPR 76

Query: 539 KFLEDF---EPIRKQMHIRKYKAEKMSELLRNSNQNAYGNGATKPYLPYSNYLPSQNPQS 369
           K   +F   +P R Q +    + ++  E  +N+++++Y +    P L  ++ LP+     
Sbjct: 77  KIRVEFPSNDPRRNQSYEYTERTDRYMEQ-QNAHESSYNSRFIPPVLHSTSSLPASQGGG 135

Query: 368 LPYP 357
           +P P
Sbjct: 136 MPSP 139


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 461 LRNSNQNAYGNGATKPYLPYSNYLPSQNPQSLPYPVGPLNMP-MPGMY 321
           + N+   +Y   +++P +P  N LPS N  SLP    P  MP MP  Y
Sbjct: 103 INNNFGYSYVGQSSQP-VPSYNPLPSYNTASLPNAGIPAAMPGMPSGY 149


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
 Frame = -1

Query: 692  RIQELLDDYKTKSAGISPDTTHALLQTAAAESEEQSDNIARDFLSGKMGVDKFLEDFEPI 513
            +I  LL        G  P TT  +LQ +   S  Q+   ARD +   M   KF+ +   +
Sbjct: 1310 KIYRLLTTKLWDIQGQFPLTTSLVLQLSQLISGSQAGPFARDTIHALMDEPKFMANGSIL 1369

Query: 512  RKQM-HIRKYKAEKMSELLRNSNQNAYGN 429
              Q+ H  ++  E    L R    + YGN
Sbjct: 1370 SNQVNHHLRFVIE---YLRREGLLDVYGN 1395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,191,412
Number of Sequences: 5004
Number of extensions: 63132
Number of successful extensions: 158
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)