Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18g02
(854 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB252421-1|BAE80739.1| 122|Apis mellifera GB15078 protein. 28 0.095
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 23 3.6
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 23 3.6
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 23 3.6
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 23 3.6
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 23 4.7
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 23 4.7
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 23 4.7
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 23 4.7
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 23 4.7
DQ855486-1|ABH88173.1| 104|Apis mellifera chemosensory protein ... 22 8.3
DQ435325-1|ABD92640.1| 160|Apis mellifera OBP7 protein. 22 8.3
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 22 8.3
DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein pr... 22 8.3
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 8.3
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 8.3
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 8.3
>AB252421-1|BAE80739.1| 122|Apis mellifera GB15078 protein.
Length = 122
Score = 28.3 bits (60), Expect = 0.095
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +2
Query: 434 HMHSDCCFSTILTFSRLCTSLYAFVYGWVQNLLEIYQHPFFQI 562
H D +TF + T W+++ +E+Y H FFQ+
Sbjct: 29 HFELDYMLGRKITFFCMATGFPRPEITWLKDGIELYHHKFFQV 71
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 3.6
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -1
Query: 455 NSNQNAYGNGATKPYLPYS-NYLPSQNPQSLPYPVGPLNMP 336
N N N Y N K Y+ NY+ Q P +P P+ N P
Sbjct: 96 NYNNNNYNNNNYKKLQYYNINYI-EQIPIPVPVPIYCGNFP 135
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 3.6
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -1
Query: 455 NSNQNAYGNGATKPYLPYS-NYLPSQNPQSLPYPVGPLNMP 336
N N N Y N K Y+ NY+ Q P +P P+ N P
Sbjct: 96 NYNNNNYNNNNYKKLQYYNINYI-EQIPIPVPVPIYCGNFP 135
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 3.6
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -1
Query: 455 NSNQNAYGNGATKPYLPYS-NYLPSQNPQSLPYPVGPLNMP 336
N N N Y N K Y+ NY+ Q P +P P+ N P
Sbjct: 96 NYNNNNYNNNNYKKLQYYNINYI-EQIPIPVPVPIYCGNFP 135
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 3.6
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -1
Query: 455 NSNQNAYGNGATKPYLPYS-NYLPSQNPQSLPYPVGPLNMP 336
N N N Y N K Y+ NY+ Q P +P P+ N P
Sbjct: 96 NYNNNNYNNNNYKKLQYYNINYI-EQIPIPVPVPIYCGNFP 135
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 22.6 bits (46), Expect = 4.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 639 RYNSCTSANSSSRIRRTVR 583
R NSC N+SSR+ +R
Sbjct: 371 RQNSCNIYNASSRMENNLR 389
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 22.6 bits (46), Expect = 4.7
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = -1
Query: 488 YKAEKMSELLRNSNQNAYGNGATKPYLP-YSNYLPSQNPQSLPYPVGPLNMP 336
YK + N N N Y N Y Y NY+ + +P PV N P
Sbjct: 89 YKYSNYNNYNNNYNNN-YNNNYNNNYKKLYKNYIINIEQIPVPVPVYYGNFP 139
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 22.6 bits (46), Expect = 4.7
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Frame = -1
Query: 488 YKAEKMSELLRNSNQNAYGNGATKPYLP-YSNYLPSQNPQSLPYPVGPLNMP 336
YK + N N N Y N Y Y NY+ + +P PV N P
Sbjct: 89 YKYSNYNNYNNNYNNN-YNNNYNNNYKKLYKNYIINIEQIPVPVPVYYGNFP 139
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 4.7
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = -1
Query: 455 NSNQNAYGNGATKPYLPYSNYLPSQNPQSLPYPVGPLNMP 336
N N N Y N L Y+ Q P +P PV N P
Sbjct: 97 NYNNNNYNNNNYNKKLYYNIINIEQIPVPVPVPVYCGNFP 136
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.6 bits (46), Expect = 4.7
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = -1
Query: 455 NSNQNAYGNGATKPYLPYSNYLPSQNPQSLPYPVGPLNMP 336
N N N Y N L Y+ Q P +P PV N P
Sbjct: 97 NYNNNNYNNNNYNKKLYYNIINIEQIPVPVPVPVYCGNFP 136
>DQ855486-1|ABH88173.1| 104|Apis mellifera chemosensory protein 5
protein.
Length = 104
Score = 21.8 bits (44), Expect = 8.3
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = -1
Query: 545 VDKFLEDFEPIRKQMHIRKYK------AEKMSELLRNSNQNAYGNGATKPYLPYSNYLPS 384
+ KFL+D ++KQ+H + +K+ ELL N + N T + +N L
Sbjct: 23 ISKFLKDRPYVQKQLHCILDRGHCDVIGKKIKELLPEVLNN-HCNRCTSRQIGIANTLIP 81
Query: 383 QNPQSLPY 360
Q+ PY
Sbjct: 82 FMQQNYPY 89
>DQ435325-1|ABD92640.1| 160|Apis mellifera OBP7 protein.
Length = 160
Score = 21.8 bits (44), Expect = 8.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 492 EVQSRENVRIVEKQQSECI 436
E+ +R+N+ I K SECI
Sbjct: 101 EMANRKNISIDVKMLSECI 119
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 8.3
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -1
Query: 452 SNQNAYGNGATKPYLPYSNYLPSQNPQSLPYPVGPLNMP 336
+N+ Y N L Y NY+ + +P PV N P
Sbjct: 101 NNKYNYNNNNYNKKLYYKNYIINIEQIPVPVPVYYGNFP 139
>DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein
protein.
Length = 484
Score = 21.8 bits (44), Expect = 8.3
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +2
Query: 437 MHSDCCFSTILTFSRLCTSLYAFVYGWV 520
M C F FS L T +Y GW+
Sbjct: 139 MAERCNFKAYCLFSFLNTIVYCVPAGWI 166
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.8 bits (44), Expect = 8.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 411 VWFCSTITICILIAVSQQF*HFLGFV 488
+W C + ILI + QF GF+
Sbjct: 375 IWSCLFFFMLILIGLDSQFCTVEGFI 400
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.8 bits (44), Expect = 8.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 411 VWFCSTITICILIAVSQQF*HFLGFV 488
+W C + ILI + QF GF+
Sbjct: 428 IWSCLFFFMLILIGLDSQFCTVEGFI 453
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 8.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 748 SNSGSFPKLNSASDLLLAMNISFSVSQ 828
S S PKLN ++ L+ +F VSQ
Sbjct: 362 STGSSIPKLNLSTALMSQPPPNFGVSQ 388
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,866
Number of Sequences: 438
Number of extensions: 5038
Number of successful extensions: 20
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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