Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f24
         (118 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    23   4.2  
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo...    22   9.8  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    22   9.8  

>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +3

Query: 21  CSNVSCSSHYDAQLTAFFID 80
           C N+ C  ++DA     ++D
Sbjct: 277 CGNIGCGRYHDAHAKQHYVD 296


>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 109 PWTVDHLARGSMKN 68
           PW+V+ L R ++KN
Sbjct: 278 PWSVEALRRAALKN 291


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 114 HYPGRWITWLAGR 76
           HY G+W  W++ R
Sbjct: 586 HYAGKWPFWMSPR 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 486,809
Number of Sequences: 5004
Number of extensions: 4943
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 2,362,478
effective HSP length: 19
effective length of database: 2,267,402
effective search space used: 43080638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)