Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f24
         (118 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   1.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   4.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   5.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    18   9.7  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 89  GSRVDEERS*LRV 51
           GSR DEER  LR+
Sbjct: 295 GSRFDEERLTLRI 307


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -1

Query: 28   FEHRHF 11
            FEHRHF
Sbjct: 986  FEHRHF 991


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +3

Query: 12   KCRCSNVSCSSHYDAQLTAF 71
            K    N+ C S Y   +TA+
Sbjct: 1421 KYTLENLLCGSRYQIYVTAY 1440


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +3

Query: 24  SNVSCSSHYDAQLTAFFIDPRAK*STVQGND 116
           S V+  + YD  +      PRA+   + G+D
Sbjct: 321 SGVAKDAAYDNIVLKLLTKPRARGCIIFGSD 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,523
Number of Sequences: 438
Number of extensions: 332
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 19
effective length of database: 138,021
effective search space used:  2622399
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)