Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f23
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   2.4  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   4.3  

>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = -2

Query: 375 EIIRTKIIKLCMRTKNNCLIKVKCTYYMSRALDIRQYHFFNYINDKFHKCSILTSFLLFC 196
           +II   +I +C   +N+ +I  + ++  +  + +  YHFF+ I  K H   + T +  F 
Sbjct: 784 DIIDKVLIDMCSSIQNSVVIINEESFMNNIDITVELYHFFSIILQK-HPSFLETMYPDFT 842

Query: 195 PVIL 184
            +IL
Sbjct: 843 QLIL 846


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/17 (76%), Positives = 15/17 (88%), Gaps = 2/17 (11%)
 Frame = +1

Query: 295 IISTLH--FNQTIIFCP 339
           IISTL+  F+QTIIFCP
Sbjct: 523 IISTLNDVFSQTIIFCP 539


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,067,449
Number of Sequences: 5004
Number of extensions: 59198
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)