Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f23
         (823 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0578 + 10869627-10869702,10870489-10870555,10870813-108709...    37   0.017
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538...    30   2.6  
10_06_0113 - 10903419-10903439,10904452-10904726,10905082-109052...    28   7.8  

>09_02_0578 +
           10869627-10869702,10870489-10870555,10870813-10870963,
           10871043-10871111,10871992-10872030,10872113-10872186,
           10872281-10872347,10872902-10873075,10873169-10873852
          Length = 466

 Score = 37.1 bits (82), Expect = 0.017
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = -2

Query: 762 AEMAIQARNKFKINKKQARRIYEILRLKNTNTSDKTAYLNYRLDVKNRL 616
           +++A   R K KINKKQ  R +EIL   N +  D+ +  N+R  + +R+
Sbjct: 327 SDLAETVRQKLKINKKQFLRCWEILIYLNLDAEDRKSMDNFRACIYDRI 375


>06_03_1313 -
           29252335-29252446,29253430-29253671,29253770-29253848,
           29254991-29255130,29255262-29255571,29255810-29255952,
           29256106-29256306,29256453-29256581,29256921-29257199,
           29258036-29259720,29261255-29261764,29261901-29262108,
           29264347-29264458,29264594-29264763
          Length = 1439

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 27/103 (26%), Positives = 45/103 (43%)
 Frame = -2

Query: 534 TVTGANETQARLSSQYHSLEIEYRRVIHRMEQD*CSEPSGGVCRLSFTTPLSCEIIRTKI 355
           T  G+ E     + QYH+   + R ++       C+ P G  C+ S+     C+ +R  +
Sbjct: 598 TSFGSEEVMEN-TKQYHA---QARWLLFLFHAKSCTSPPGS-CKSSY-----CDRVRELV 647

Query: 354 IKLCMRTKNNCLIKVKCTYYMSRALDIRQYHFFNYINDKFHKC 226
           + L      +C IK  C+Y   R   +   H+ N IN+  H C
Sbjct: 648 VHL-----TDCQIK-DCSYRHCRESKMVSDHYKNCINEHCHVC 684


>10_06_0113 -
           10903419-10903439,10904452-10904726,10905082-10905247,
           10905622-10905766,10905837-10905896,10905979-10906028
          Length = 238

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 316 NQTIIFCPHAQFNNLRPYNFT 378
           NQT  FC    F+ + PYNF+
Sbjct: 119 NQTSFFCSRTTFSTICPYNFS 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,958,132
Number of Sequences: 37544
Number of extensions: 319382
Number of successful extensions: 573
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)