Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18f23
(823 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT023492-1|AAY84892.1| 405|Drosophila melanogaster RE20268p pro... 77 3e-14
AE014297-355|AAF51953.1| 405|Drosophila melanogaster CG2051-PB,... 77 4e-14
AE014297-354|AAN14322.1| 405|Drosophila melanogaster CG2051-PA,... 77 4e-14
AY121698-1|AAM52025.1| 1228|Drosophila melanogaster RE70806p pro... 32 1.1
AF210316-1|AAF19446.1| 1235|Drosophila melanogaster hibris protein. 32 1.1
AE013599-2004|AAF58172.3| 1228|Drosophila melanogaster CG7449-PA... 32 1.1
AE013599-2003|AAO41390.1| 1235|Drosophila melanogaster CG7449-PB... 32 1.1
>BT023492-1|AAY84892.1| 405|Drosophila melanogaster RE20268p
protein.
Length = 405
Score = 77.0 bits (181), Expect = 3e-14
Identities = 41/126 (32%), Positives = 64/126 (50%)
Frame = -2
Query: 822 AKNCERLPAFQPAALYLGFSAEMAIQARNKFKINKKQARRIYEILRLKNTNTSDKTAYLN 643
A++C +L +F P+ + GF+ EM +AR K+N Q R++YE+LRL TN D+ Y
Sbjct: 278 ARSCMKLKSFAPSEIVKGFNKEMVREAREALKLNPLQVRKVYELLRLFYTNVKDEKEYRP 337
Query: 642 YRLDVKNRLNAPFQXXXXXXXXXXXXXKPEEFVATVTVTGANETQARLSSQYHSLEIEYR 463
YRL+VK RLNA + E + T + +L +Y +E EY+
Sbjct: 338 YRLEVKKRLNAVYYKQLKDLKKMERFKMDTEMLRARLPT-VQQRMEQLHEEYRVVEQEYQ 396
Query: 462 RVIHRM 445
I ++
Sbjct: 397 STIAKL 402
>AE014297-355|AAF51953.1| 405|Drosophila melanogaster CG2051-PB,
isoform B protein.
Length = 405
Score = 76.6 bits (180), Expect = 4e-14
Identities = 41/126 (32%), Positives = 63/126 (50%)
Frame = -2
Query: 822 AKNCERLPAFQPAALYLGFSAEMAIQARNKFKINKKQARRIYEILRLKNTNTSDKTAYLN 643
A++C +L +F P + GF+ EM +AR K+N Q R++YE+LRL TN D+ Y
Sbjct: 278 ARSCMKLKSFAPGEIVKGFNKEMVREAREALKLNPLQVRKVYELLRLFYTNVKDEKEYRP 337
Query: 642 YRLDVKNRLNAPFQXXXXXXXXXXXXXKPEEFVATVTVTGANETQARLSSQYHSLEIEYR 463
YRL+VK RLNA + E + T + +L +Y +E EY+
Sbjct: 338 YRLEVKKRLNAVYYKQLKDLKKMERFKMDTEMLRARLPT-VQQRMEQLHEEYRVVEQEYQ 396
Query: 462 RVIHRM 445
I ++
Sbjct: 397 STIAKL 402
>AE014297-354|AAN14322.1| 405|Drosophila melanogaster CG2051-PA,
isoform A protein.
Length = 405
Score = 76.6 bits (180), Expect = 4e-14
Identities = 41/126 (32%), Positives = 63/126 (50%)
Frame = -2
Query: 822 AKNCERLPAFQPAALYLGFSAEMAIQARNKFKINKKQARRIYEILRLKNTNTSDKTAYLN 643
A++C +L +F P + GF+ EM +AR K+N Q R++YE+LRL TN D+ Y
Sbjct: 278 ARSCMKLKSFAPGEIVKGFNKEMVREAREALKLNPLQVRKVYELLRLFYTNVKDEKEYRP 337
Query: 642 YRLDVKNRLNAPFQXXXXXXXXXXXXXKPEEFVATVTVTGANETQARLSSQYHSLEIEYR 463
YRL+VK RLNA + E + T + +L +Y +E EY+
Sbjct: 338 YRLEVKKRLNAVYYKQLKDLKKMERFKMDTEMLRARLPT-VQQRMEQLHEEYRVVEQEYQ 396
Query: 462 RVIHRM 445
I ++
Sbjct: 397 STIAKL 402
>AY121698-1|AAM52025.1| 1228|Drosophila melanogaster RE70806p protein.
Length = 1228
Score = 31.9 bits (69), Expect = 1.1
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = -2
Query: 813 CERLPAFQPAALYLGFSAEMAIQARNKFKINKKQ--ARRIYEILRLKNTNTSDKTAYLNY 640
C L + QP+ ++ ++ +Q RNKFK ++Q A L ++NT+ D Y Y
Sbjct: 856 CRSLASPQPSFIWRRHGKDLKMQRRNKFKSVERQVDALNFESALLIENTSPDD---YGQY 912
Query: 639 RLDVKNRL 616
V+N L
Sbjct: 913 ECVVRNSL 920
>AF210316-1|AAF19446.1| 1235|Drosophila melanogaster hibris protein.
Length = 1235
Score = 31.9 bits (69), Expect = 1.1
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = -2
Query: 813 CERLPAFQPAALYLGFSAEMAIQARNKFKINKKQ--ARRIYEILRLKNTNTSDKTAYLNY 640
C L + QP+ ++ ++ +Q RNKFK ++Q A L ++NT+ D Y Y
Sbjct: 856 CRSLASPQPSFIWRRHGKDLKMQRRNKFKSVERQVDALNFESALLIENTSPDD---YGQY 912
Query: 639 RLDVKNRL 616
V+N L
Sbjct: 913 ECVVRNSL 920
>AE013599-2004|AAF58172.3| 1228|Drosophila melanogaster CG7449-PA,
isoform A protein.
Length = 1228
Score = 31.9 bits (69), Expect = 1.1
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = -2
Query: 813 CERLPAFQPAALYLGFSAEMAIQARNKFKINKKQ--ARRIYEILRLKNTNTSDKTAYLNY 640
C L + QP+ ++ ++ +Q RNKFK ++Q A L ++NT+ D Y Y
Sbjct: 856 CRSLASPQPSFIWRRHGKDLKMQRRNKFKSVERQVDALNFESALLIENTSPDD---YGQY 912
Query: 639 RLDVKNRL 616
V+N L
Sbjct: 913 ECVVRNSL 920
>AE013599-2003|AAO41390.1| 1235|Drosophila melanogaster CG7449-PB,
isoform B protein.
Length = 1235
Score = 31.9 bits (69), Expect = 1.1
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = -2
Query: 813 CERLPAFQPAALYLGFSAEMAIQARNKFKINKKQ--ARRIYEILRLKNTNTSDKTAYLNY 640
C L + QP+ ++ ++ +Q RNKFK ++Q A L ++NT+ D Y Y
Sbjct: 856 CRSLASPQPSFIWRRHGKDLKMQRRNKFKSVERQVDALNFESALLIENTSPDD---YGQY 912
Query: 639 RLDVKNRL 616
V+N L
Sbjct: 913 ECVVRNSL 920
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,314,820
Number of Sequences: 53049
Number of extensions: 580098
Number of successful extensions: 1160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3880595628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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