Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18f23
(823 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49128-4|CAA88954.1| 541|Caenorhabditis elegans Hypothetical pr... 77 2e-14
Z77661-3|CAB01187.2| 264|Caenorhabditis elegans Hypothetical pr... 30 1.7
U21317-9|AAA62530.3| 355|Caenorhabditis elegans Serpentine rece... 30 1.7
Z46242-4|CAA86331.1| 340|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z83220-2|CAB05701.2| 905|Caenorhabditis elegans Hypothetical pr... 29 3.0
U64600-2|AAK39200.2| 519|Caenorhabditis elegans Twik family of ... 29 4.0
Z81479-6|CAB03938.1| 411|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z68003-2|CAA91976.2| 560|Caenorhabditis elegans Hypothetical pr... 29 5.3
AL032623-10|CAA21506.2| 300|Caenorhabditis elegans Hypothetical... 29 5.3
Z71185-6|CAI46563.1| 286|Caenorhabditis elegans Hypothetical pr... 28 9.3
>Z49128-4|CAA88954.1| 541|Caenorhabditis elegans Hypothetical
protein M03C11.4 protein.
Length = 541
Score = 76.6 bits (180), Expect = 2e-14
Identities = 47/127 (37%), Positives = 62/127 (48%), Gaps = 1/127 (0%)
Frame = -2
Query: 816 NCERLPAFQPAALYLGFSAEMAIQARNKFKINKKQARRIYEILRLKNTNTSDKTAYLNYR 637
NC L F P L G+S +M A K KI+++QARR+YEILR + TN DK R
Sbjct: 410 NCMTLREFAPENLKRGYSDKMRQAALEKLKISRQQARRVYEILRYRATNKKDKEELKAQR 469
Query: 636 LDVKNRLNAPFQXXXXXXXXXXXXXKPEEFVATVTVTGANETQ-ARLSSQYHSLEIEYRR 460
+DVK RL AP + P+E ET+ + LS Y L Y++
Sbjct: 470 IDVKRRLYAPMKKSDQDWKRLNLALTPDELRQAACGQMDEETKFSTLSQNYDRLMEAYQK 529
Query: 459 VIHRMEQ 439
I R+EQ
Sbjct: 530 TIDRIEQ 536
>Z77661-3|CAB01187.2| 264|Caenorhabditis elegans Hypothetical
protein F40G12.4 protein.
Length = 264
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +3
Query: 702 FSLLVFCLF*IYFAPGSPFQLRTLSIR 782
F L +FCLF Y G PF L LS R
Sbjct: 6 FCLAIFCLFLSYHCEGIPFHLEILSDR 32
>U21317-9|AAA62530.3| 355|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 1 protein.
Length = 355
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = -2
Query: 330 NNCLIKVKCTYYMSRALDIRQYHFFNYINDKFHKCSILTSFLLFCPVILLL*DYKI 163
NN ++ + T YMS++ + Y++ F+ C +L SFL+ +I + Y++
Sbjct: 239 NNFVMAIILTMYMSKSFKVSYPLATLYLHFAFNCCVLLYSFLMLIIIIFSVKQYRM 294
>Z46242-4|CAA86331.1| 340|Caenorhabditis elegans Hypothetical
protein F35G12.5 protein.
Length = 340
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 720 KKQARRIYEILRLKNTNTSDKTAYLNYRLDVKN 622
KK+ARR+ EI KN +T Y+ +LD KN
Sbjct: 139 KKEARRLAEIWWAKNLRFFPQTMYVLQKLDQKN 171
>Z83220-2|CAB05701.2| 905|Caenorhabditis elegans Hypothetical
protein C34B7.2 protein.
Length = 905
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 502 TLQSIPLARDRVPPRHTSDGTRLMLGT 422
TLQ P R+ PPR+TS R +L T
Sbjct: 768 TLQKSPTKRESTPPRNTSRAKRSLLST 794
>U64600-2|AAK39200.2| 519|Caenorhabditis elegans Twik family of
potassium channelsprotein 26 protein.
Length = 519
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = -2
Query: 366 RTKIIKLCMRTKNNCLIKVKCTYYMSRALDIRQYHFFNYINDKFHK 229
R++IIK + +NNC++ +K +MS+ D+ + F ++K +K
Sbjct: 13 RSRIIKNHLTERNNCIV-LKIDTHMSKVEDMSPFGFHFEFDEKKYK 57
>Z81479-6|CAB03938.1| 411|Caenorhabditis elegans Hypothetical
protein C34F6.7 protein.
Length = 411
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 633 LIYNSNMQSYQKYLYSSNAIFHKFSLLVFCLF*IYFAPGS 752
++YNS + +Y A FH F C+ YF G+
Sbjct: 69 ILYNSRQHDFVEYAAKRVAFFHAFVAFYPCVIAAYFVHGN 108
>Z68003-2|CAA91976.2| 560|Caenorhabditis elegans Hypothetical
protein E02H4.2 protein.
Length = 560
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 667 SICILQTQYFINSPCLFFVYFKFISRLD 750
++C+L+T+ SP FF FKFISR D
Sbjct: 278 TVCVLKTKGN-KSPIQFFSVFKFISRSD 304
>AL032623-10|CAA21506.2| 300|Caenorhabditis elegans Hypothetical
protein Y43F8B.10 protein.
Length = 300
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Frame = -2
Query: 411 VCRLSFTTPLSCEII-------RTKIIKLCMRTKNNCLIKVKCTYYMSRALDIRQYHFFN 253
V +L T P+SC+++ RTKI + C T CL V+C+ R+ +++ F
Sbjct: 160 VKKLFATGPISCDVLNEHLECYRTKIEENC-DTDAECLGAVQCSQPELRSDFLQKCSIFQ 218
Query: 252 YINDKFHKC 226
+ + +F C
Sbjct: 219 FFHTEFATC 227
>Z71185-6|CAI46563.1| 286|Caenorhabditis elegans Hypothetical
protein C35A5.10 protein.
Length = 286
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 429 SEPSGGVCRLSFTTPLSCEIIRTKIIKLCM--RTKNNCLIKVKCT 301
+EPSGGVCR + P + + C + NC+++ C+
Sbjct: 192 TEPSGGVCRNNGVCPSGHSCVAGNVCCRCPVGSSAGNCILQSDCS 236
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,727,988
Number of Sequences: 27780
Number of extensions: 327084
Number of successful extensions: 738
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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