Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f22
         (278 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    28   0.28 
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   2.6  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    24   4.6  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    24   4.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   4.6  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    24   4.6  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    24   4.6  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    23   8.0  
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom...    23   8.0  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    23   8.0  

>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 0.28
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 191 WLLARSKFLIPNILF*YNYSSKCSLKFFY 277
           W+LAR KF   N    YNYS+K  +  F+
Sbjct: 408 WMLARPKFSQINTSHLYNYSTKQMISKFW 436


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 206 FALTTKSLRMSPNKGT 159
           F+L++KSLR+S  KGT
Sbjct: 74  FSLSSKSLRLSNRKGT 89


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 157 HVPLLGDILKDLVVSAK*ISNSKH 228
           HVP+  DI    +V  K  +N KH
Sbjct: 382 HVPVFNDIYLTKIVKNKATANKKH 405


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 80  PTTIRPARKIISPLETLFLGGVQITLMFLCWATFLKI 190
           P TI   RK+ S L+   +   ++ L F CW   L +
Sbjct: 73  PFTIL-CRKLASTLKQRVIFFTRVLLTFFCWTVLLPL 108


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 136  WRSADNAHVPLLGDILKDLVVS 201
            WRSAD+ H+P +   L   V+S
Sbjct: 1114 WRSADDLHLPYITRALLTNVLS 1135


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 64  WDGRPAHHHQAGEEDHLTSGNLVSWRSADN-AHVPL 168
           WDG  A    +   D+   GN+ + R+ +N  H P+
Sbjct: 226 WDGENAESDSSLNGDNTRGGNISTNRAFNNMGHAPI 261


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -2

Query: 181 ECRPT-KEHERYLHSAKKQGFQR 116
           +CR     H RYL SAKK G  R
Sbjct: 20  QCRNKYHSHVRYLSSAKKSGILR 42


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 175 RPTKEHERYLHSAKKQGFQR*DDLPRRPDG 86
           RPT+  ER+  +   +GF   D+  R  DG
Sbjct: 243 RPTRRRERHYRTRDDEGF---DEFGRSRDG 269


>SPCC584.14 |mug160||conserved eukaryotic
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 25  LVAVMLDIDQHPGW 66
           L++++ D D HP W
Sbjct: 135 LLSIIFDFDSHPDW 148


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 128  LFLGGVQITLMFLCWATF-LKIWLLARSKFLIPNILF*YNYSSKCSLKFFY 277
            LFL G+ I L+ L WA F + +  L    FL+  I+F  +     SL F +
Sbjct: 996  LFLQGLAIDLLKLPWAVFHIFLRYLFSHSFLV--IIFACSVILNLSLMFCF 1044


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,160,674
Number of Sequences: 5004
Number of extensions: 20458
Number of successful extensions: 47
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)