Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18f21
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c... 30 0.35
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 29 0.62
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 29 1.1
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 28 1.4
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 27 2.5
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr... 27 3.3
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 27 3.3
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 27 4.4
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc... 27 4.4
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl... 26 7.6
>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 315
Score = 30.3 bits (65), Expect = 0.35
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 33 KIKHLVTIYSINDFALVQPSLYVQVLQCRTLSNITHI*MNLKF 161
KI +V++Y I++ L++ YVQ Q TLS+ ++ KF
Sbjct: 42 KISRIVSLYGIDEIILLEDPEYVQNTQVHTLSSDAYLKDPTKF 84
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 29.5 bits (63), Expect = 0.62
Identities = 19/56 (33%), Positives = 33/56 (58%)
Frame = -3
Query: 388 TSYLIIKSFTAGFFYLIPERVTAVEKQTILANFQLLKYPHSESCLPKTK*NYYANT 221
+S+LII +FT+ + + P +V++V + NF + + S S LP T +Y +NT
Sbjct: 440 SSFLIISTFTSSYEHSEPFKVSSVPLTS--NNFSSISH-SSASSLPITPSSYLSNT 492
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 463 IHLHRGTNTDCNTLMISTNQI-YENLNN-LYNRSHDNRNAMFKSYFVNTLF 609
+H H TN + N L + NQ+ +N +N Y+ ++D + M +N F
Sbjct: 156 VHPHTNTNANSNNLKVYANQLSQQNTSNPTYHNAYDMASMMKNGSRMNNSF 206
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 28.3 bits (60), Expect = 1.4
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 1/121 (0%)
Frame = -3
Query: 475 DVNVYFVRDINILYVRFNFKSKPNLNLYLTSYLIIKSFTAGFFYLIPERVTAVEKQTILA 296
DV V ++NILY+ +F + +L YLI L+ V K+T++
Sbjct: 116 DVFVCVYSNLNILYISRSFPDQISLLFSRYCYLIASKIDD----LLDSHPNEVFKETLIC 171
Query: 295 NFQLLKYPHSESCLPKTK*NYYANTAGS-KGFFSRNSNLMIYFSTLNFKFIYICVIFERV 119
Q HS++ K + + T GS + YFS LN + CV+ +
Sbjct: 172 VIQ--SAVHSQASSTKAQTQFLHQTLGSILALLCKTQKGDPYFSFLN-AVLMKCVLTQHT 228
Query: 118 L 116
L
Sbjct: 229 L 229
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 517 NQIYENLNNLYNRSHDNRNAMFKSYFVNTLFD 612
N + E +NN+ + D NA F++Y+++ L D
Sbjct: 896 NILLELINNMASMGPDVSNAFFQTYYISLLQD 927
>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 239
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 568 DYHEIYCTNCSNFHKFDSLKSLTCCSQYSYPDVNVYFVRD 449
DY +YC+NC KF +K L S+PD + + D
Sbjct: 66 DYAFLYCSNC----KFPHIKGLCQICSNSHPDDSAWNSND 101
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 27.1 bits (57), Expect = 3.3
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 460 NIHLHRGTNT-DCNTLMISTNQIYENLNNLYNRSHDNRNAMFKSYFVNTLF 609
N H +NT D NT++ +T + N + NR DN+ +F+ N LF
Sbjct: 1037 NSIFHYPSNTADMNTIVFNTFVWLQLFNEINNRRLDNKLNIFERINHNFLF 1087
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 618 VSVKQSIYEITFKHCITIIMRSIV 547
VS K SI E+T+ HC+ I ++
Sbjct: 405 VSEKLSIQEVTYAHCVRIFCEHVM 428
>SPAC5D6.04 |||auxin family transmembrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 211 KGFFSRNSNLMIYFSTLNFKFIYICVIFERV 119
KGF R++ +I S+LN F C++FE+V
Sbjct: 39 KGFLPRDAQKVI--SSLNVYFFTPCLVFEKV 67
>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
endonuclease Cce1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 289 QLLKYPHSESCLPKTK*NYYANTAGSKGFFSRNSN 185
Q ++YP S PK+ +Y+A+ +K FS+ +
Sbjct: 156 QKIQYPFLLSLSPKSTYSYWASVLNTKASFSKKKS 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,181,706
Number of Sequences: 5004
Number of extensions: 65664
Number of successful extensions: 169
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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