Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f21
         (837 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245...    31   1.1  
02_01_0478 - 3442222-3442227,3442777-3442848,3442966-3443137,344...    31   1.5  
08_02_1333 + 26215545-26215759,26217315-26217372,26218263-262183...    30   2.0  
03_01_0302 - 2361948-2362649,2363422-2363617,2363873-2363997,236...    29   3.5  
01_05_0444 + 22298490-22298598,22299847-22300108,22302420-223025...    29   4.6  
04_03_0093 - 11085882-11087339                                         29   6.1  
04_04_1056 - 30447791-30447850,30448020-30448085,30448299-304485...    28   8.0  

>08_01_0002 -
           20208-20594,21525-21671,21754-21917,22005-22162,
           24533-24826,24916-25121,25216-25812,26366-27097
          Length = 894

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = -3

Query: 556 IYCTNCSNFHKFDSLKSLTCCSQYSYPDVNVYFVRDINILYVRFNFKSKPNLNLYLTSYL 377
           ++CT+C +F   D + S T  S  S   V   F+  + +L+  F+   + +   +LT  +
Sbjct: 268 LFCTSCFSFGNMDRVHSYTSTS--SILLVGYGFIFSLGVLFTGFHTFDQYSRGEHLTIAV 325

Query: 376 IIKSFTAGFFYL 341
             K  T G + L
Sbjct: 326 FFKVLTNGMYRL 337


>02_01_0478 -
           3442222-3442227,3442777-3442848,3442966-3443137,
           3443388-3443500,3443771-3443908,3444016-3444221,
           3444317-3444388,3444484-3444532,3444635-3444714,
           3444817-3445132,3445242-3445415,3445513-3446139,
           3446235-3446297,3446399-3446470,3446602-3446664,
           3446741-3446872,3447779-3447889,3449273-3449371,
           3450117-3450194
          Length = 880

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -2

Query: 332 KSNCSGKTNDFSEFSVVK--ISSFRKLSSKDKVKLLCKYSRKQR 207
           +S C+ K +D+ +  +++  +S  R  SSK K+ L+CK    +R
Sbjct: 65  QSTCTFKISDYGKLKIIRHELSLMRVSSSKTKMPLICKRKMPRR 108


>08_02_1333 +
           26215545-26215759,26217315-26217372,26218263-26218342,
           26218606-26218639,26218756-26218896
          Length = 175

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 9   IHKHYQNTKIKHLVTIYSINDFALVQPSLYVQVLQCRTLSNITHI 143
           +HK+  N K K  V IYS++    ++PSL+VQ    R   N+T I
Sbjct: 80  MHKYVDN-KGKANVAIYSLHIVLFLKPSLFVQPYFFRFTINLTKI 123


>03_01_0302 -
           2361948-2362649,2363422-2363617,2363873-2363997,
           2364118-2364180,2364445-2364495,2364597-2364668,
           2364779-2364886,2365031-2365135,2365505-2365555,
           2365971-2365995,2366234-2366258,2366352-2366439
          Length = 536

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 238 NYYANTAGSKGFFSRNSNLMIYFSTLNFKFIYICV 134
           N+Y    G++ ++  N  LM  FST  F    ICV
Sbjct: 188 NFYVRGDGTRAYYFSNEYLMDLFSTCGFTVEEICV 222


>01_05_0444 +
           22298490-22298598,22299847-22300108,22302420-22302516,
           22302633-22302647,22302775-22302831,22303481-22303557,
           22303688-22303967
          Length = 298

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 511 STNQIYENLNNLYNRSHDNRNAMFKSY 591
           S + +YE +N+++   HD  NA F SY
Sbjct: 208 SEDSVYELINHVFPSLHDKNNANFASY 234


>04_03_0093 - 11085882-11087339
          Length = 485

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 424 NFKSKPNLNLYLTSYLIIKSFT-AGFFYLIPERVTAVEKQTILAN 293
           N+K KPN  L L  YL+ K+ +   FF  +P + TA ++Q  L N
Sbjct: 425 NYKGKPNERL-LAKYLLSKATSLEQFFVTLPAKTTA-DRQLKLTN 467


>04_04_1056 -
           30447791-30447850,30448020-30448085,30448299-30448583,
           30448744-30448869,30449068-30449154,30449273-30449695
          Length = 348

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -3

Query: 442 ILYVRFNFKSKPNLNLYLTSYLIIKSFTAGF--FYLIPERVTAVEKQTILA 296
           +L++R++  +KP   +  +  +   +   G    YL+P+ VTA E+Q +LA
Sbjct: 95  VLHIRYSVPAKPKAPVGGSLPVATSASELGVPGIYLVPDFVTAAEEQELLA 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,394,800
Number of Sequences: 37544
Number of extensions: 314807
Number of successful extensions: 639
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)