Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18f21
(837 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 29 0.070
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 25 0.65
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 25 0.65
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 25 0.65
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 25 0.65
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 25 0.65
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 25 1.1
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 25 1.1
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 25 1.1
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 23 3.5
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 23 4.6
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 22 8.1
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 28.7 bits (61), Expect = 0.070
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 508 ISTNQIYENLNNLYNRSHDNRNAMFKSYFVN 600
+S N Y N N YN ++ N+ +K+Y +N
Sbjct: 318 LSNNYNYNNNNYKYNYNNYNKKLYYKNYIIN 348
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 25.4 bits (53), Expect = 0.65
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 508 ISTNQIYENLNNLYNRSHDNRNAMFKSYF 594
+S N Y N NN N +++N N Y+
Sbjct: 85 LSNNYKYSNYNNYNNNNYNNNNYKKLQYY 113
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 25.4 bits (53), Expect = 0.65
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 508 ISTNQIYENLNNLYNRSHDNRNAMFKSYF 594
+S N Y N NN N +++N N Y+
Sbjct: 85 LSNNYKYSNYNNYNNNNYNNNNYKKLQYY 113
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 25.4 bits (53), Expect = 0.65
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 508 ISTNQIYENLNNLYNRSHDNRNAMFKSYF 594
+S N Y N NN N +++N N Y+
Sbjct: 85 LSNNYKYSNYNNYNNNNYNNNNYKKLQYY 113
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 25.4 bits (53), Expect = 0.65
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 508 ISTNQIYENLNNLYNRSHDNRNAMFKSYF 594
+S N Y N NN N +++N N Y+
Sbjct: 85 LSNNYKYSNYNNYNNNNYNNNNYKKLQYY 113
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 25.4 bits (53), Expect = 0.65
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 496 NTLMISTNQIYENLNNLYNRSHDNRNAM--FKSYFVN 600
N + + N N NN YN +++N N +K+Y +N
Sbjct: 87 NKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIIN 123
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 24.6 bits (51), Expect = 1.1
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Frame = +1
Query: 526 YENLNNLYNRSHDNR-----NAMFKSYFVN 600
Y N NN YN +++N ++K+Y +N
Sbjct: 94 YNNYNNNYNNNYNNNYNNNYKKLYKNYIIN 123
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 24.6 bits (51), Expect = 1.1
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Frame = +1
Query: 526 YENLNNLYNRSHDNR-----NAMFKSYFVN 600
Y N NN YN +++N ++K+Y +N
Sbjct: 94 YNNYNNNYNNNYNNNYNNNYKKLYKNYIIN 123
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 24.6 bits (51), Expect = 1.1
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 451 LERNIHLHR--GTNTDCNTLMISTNQIYENLNNL 546
LE + +HR GTNTD L + + E+L +L
Sbjct: 254 LELTLRIHRGGGTNTDARHLFRTASSTPEDLQDL 287
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 23.0 bits (47), Expect = 3.5
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +1
Query: 496 NTLMISTNQIYENLNNLYNRSHDNRNAMFKSYFVN 600
N S Y N N YN ++N N +K + N
Sbjct: 320 NNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYN 354
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 22.6 bits (46), Expect = 4.6
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +1
Query: 502 LMISTNQIYENLNNLYNRSHDNRNAMFKSYFVNTLFDRHSIISAIKC 642
+ I Q EN+ SH N+ M+K N + R + +S+ C
Sbjct: 650 IYIPEPQDIENIFKYGYVSHANQRNMYKLDLKNMKYTRSADLSSYNC 696
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 21.8 bits (44), Expect = 8.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 454 ERNIHLHRGTNTDCNTLMISTNQIYENLNNLYNRSHDNRN 573
+RN + T + NT + N N NN N ++DN N
Sbjct: 220 QRNSNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNGN 259
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,717
Number of Sequences: 438
Number of extensions: 4110
Number of successful extensions: 27
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -