Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f19
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0158 + 2332381-2333211                                           30   1.9  
03_05_0795 + 27783813-27785246,27785339-27785591,27786377-27786639     29   5.8  
08_01_0176 - 1502750-1502838,1502839-1502992                           28   7.6  

>09_01_0158 + 2332381-2333211
          Length = 276

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -2

Query: 540 VYSVSASSQPEATPRSLAPCTFINVINV*KN-LTNSV 433
           V ++SA+    A PR LA C ++NVI++  N LT S+
Sbjct: 127 VLNLSANRLSGAIPRDLARCAYLNVIDLHANQLTGSI 163


>03_05_0795 + 27783813-27785246,27785339-27785591,27786377-27786639
          Length = 649

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -1

Query: 127 SFNPVCMRSMVVFAATIIN*FYCYLRLCELFFCTIMKXQ 11
           S    C RS+V  A   +N    YLR C   FCTI + Q
Sbjct: 300 SVQMTCSRSLVRVACRSLNALVAYLRAC---FCTISEQQ 335


>08_01_0176 - 1502750-1502838,1502839-1502992
          Length = 80

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -1

Query: 808 PAPSFYLDLKYSVNLTM*EKFNCSGTKGRRPVCVAM 701
           P+P+F L+L  ++   +   F CS T+G+  +C+A+
Sbjct: 25  PSPAFCLNLHCTILPELLVIFMCSVTEGQMAICMAL 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,181,008
Number of Sequences: 37544
Number of extensions: 384340
Number of successful extensions: 843
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)