Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18f18
(284 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 29 0.17
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos... 29 0.17
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 27 0.40
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 27 0.52
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 26 0.92
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 26 1.2
SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||... 24 3.7
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 24 4.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 24 4.9
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 23 6.5
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 23 8.5
>SPAC1805.05 |cki3||serine/threonine protein kinase
Cki3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 439
Score = 28.7 bits (61), Expect = 0.17
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 180 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 67
+ L G A+Y + T+ GR + R MG V +YF
Sbjct: 177 EHKSLSGTARYMSINTHLGREQSRRDDLESMGHVFMYF 214
>SPBC1347.06c |cki1||serine/threonine protein kinase
Cki1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 28.7 bits (61), Expect = 0.17
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 180 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 67
++ L G A+Y + T+ GR + R +G V +YF
Sbjct: 174 EKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYF 211
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 27.5 bits (58), Expect = 0.40
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 180 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 67
+ L G A+Y + T+ GR + R +G V +YF
Sbjct: 174 ERKSLSGTARYMSINTHLGREQSRRDDLESLGHVFMYF 211
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 27.1 bits (57), Expect = 0.52
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 89 ITAYVALAVFNLPLF-V*LLKYFAKPLSWDSSTEESPAILI 208
++A++ L NLP + + F + LSW SST+ + L+
Sbjct: 288 VSAFLTLTQLNLPAYDLNFCNNFIRKLSWSSSTKSNYVSLL 328
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 0.92
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 183 VDESQLKGLAKYFNSQTNRGRLNTARATYAV-MGAVILYF 67
+D+S LK Y + N R+NT A A+ GA +L +
Sbjct: 205 LDDSNLKASCVYHDGSFNDTRMNTTLAVTAIDNGATVLNY 244
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 25.8 bits (54), Expect = 1.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 180 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 67
D L G A+Y + T+ G + R +G V+LYF
Sbjct: 170 DNKNLTGTARYASINTHIGIEQSRRDDLESLGYVLLYF 207
>SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 280
Score = 24.2 bits (50), Expect = 3.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 169 AQRLSKILQQSDKQRKIKYGQSH 101
A+R SK+ ++SDK+ + +SH
Sbjct: 103 AERESKLQEESDKETPVMLNKSH 125
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 23.8 bits (49), Expect = 4.9
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -2
Query: 157 SKILQQSDKQRKIKYGQSHICS 92
SK+L+ S + +K K+G+ C+
Sbjct: 106 SKVLRDSTRTKKFKFGKEFHCA 127
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 23.8 bits (49), Expect = 4.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 203 GWPETLLSMNPSSKA*QNTSTVRQTEED 120
G+P ++S +P+SK TS + E+D
Sbjct: 390 GFPNKIVSFSPNSKEVTITSAPDEVEQD 417
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 23.4 bits (48), Expect = 6.5
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -3
Query: 180 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 67
+ L G A+Y + T+ G + R +G V++YF
Sbjct: 171 ENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLVYF 208
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 23.0 bits (47), Expect = 8.5
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 190 VSGHPDLKNYVITAQHPQNGSK 255
+ GH + +I AQ+PQN +
Sbjct: 174 IMGHVSILTQLIVAQNPQNSKE 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,081,638
Number of Sequences: 5004
Number of extensions: 17184
Number of successful extensions: 50
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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