Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f14
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.1  
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...    27   3.3  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   5.8  
SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyce...    26   7.7  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 115  DIYNVNAPPPP*HINSKVSSIVTVAAPPSKPKR 213
            D  NV+APPPP    + + S   V A PS P+R
Sbjct: 1371 DSSNVHAPPPPVQPMNAMPSHNAVNARPSAPER 1403


>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 480 KHYNIFTNNFNSPFVKLIDPN 542
           KH+  + NN N+   KL DPN
Sbjct: 53  KHHQTYVNNLNAAQEKLADPN 73


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 64  GGRAHSPLGVKWLLEPIDIYN 126
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 218

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 746 IFLSTSTEREHGKYIKKIKHYFINRNEIASKYFYL 642
           + LSTS   + GK +KKI + F+ +     K  Y+
Sbjct: 77  LVLSTSYMNDSGKQLKKISNDFVRKVSPLDKIVYV 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,294,301
Number of Sequences: 5004
Number of extensions: 67623
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)