Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f14
         (842 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415...    31   1.1  
09_06_0172 + 21329904-21331512,21331595-21331740,21332333-213325...    29   6.1  
10_07_0044 + 12319382-12319532,12319978-12320163,12320247-123203...    28   8.1  

>07_03_0329 + 16840051-16840917,16840999-16841342,16841444-16841574,
            16841671-16841792,16841877-16841983,16842104-16842236,
            16842342-16842458,16842560-16842667,16842716-16842742,
            16842759-16842830,16843462-16843584,16843671-16843833,
            16844140-16844264,16844355-16844489,16844574-16844677,
            16844772-16844834,16844930-16844993,16845186-16845318,
            16845414-16845487,16845603-16845697,16845799-16845830,
            16846201-16846355
          Length = 1097

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 700  FIYLPCSRSVLVDKKIYYVHKYLFLCSRY*LTLI 801
            ++Y  C+RSV +   +YY HK  F  +R+ LT +
Sbjct: 1035 YLYTSCTRSVSIPPPVYYAHKLAFR-ARFYLTQV 1067


>09_06_0172 +
           21329904-21331512,21331595-21331740,21332333-21332556,
           21333689-21334448
          Length = 912

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 121 YNVNAPPPP*HINSKVSSIVTVAAPPSKPK 210
           Y   +PPPP  I S     VT  APPS P+
Sbjct: 324 YGGASPPPPADIPSTSRGEVTPPAPPSPPR 353


>10_07_0044 + 12319382-12319532,12319978-12320163,12320247-12320396,
            12320495-12320644,12320728-12321417,12321641-12322033,
            12322073-12322546,12322634-12323974,12324042-12324388
          Length = 1293

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 99   PLNTKWAVSSSTHLSNKKNCHKKIACTNNI 10
            PL+ +W VS + +L    NCH  +   ++I
Sbjct: 1021 PLDNRWVVSYNPYLLRMYNCHMNVEVCSSI 1050


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,045,343
Number of Sequences: 37544
Number of extensions: 452326
Number of successful extensions: 999
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)