Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f14
         (842 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X89858-1|CAA61954.1| 1201|Drosophila melanogaster actin binding ...    29   8.0  
AY069520-1|AAL39665.1| 1239|Drosophila melanogaster LD23793p pro...    29   8.0  
AY069223-1|AAL39368.1|  616|Drosophila melanogaster GH27072p pro...    29   8.0  
AE013599-458|AAM71100.1|  616|Drosophila melanogaster CG2092-PC,...    29   8.0  
AE013599-457|AAM71099.1| 1212|Drosophila melanogaster CG2092-PA,...    29   8.0  
AE013599-456|AAF59225.3| 1239|Drosophila melanogaster CG2092-PB,...    29   8.0  

>X89858-1|CAA61954.1| 1201|Drosophila melanogaster actin binding
           protein protein.
          Length = 1201

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 127 VNAPPPP*HINSKVSSIVTVAAPPSKPKRITASRQK*VGW 246
           + APPP  H++S+ +       PP K +   ASR K + W
Sbjct: 218 LEAPPPKPHLSSRRAEKGPAPLPPKKDEVDEASRTKQLKW 257


>AY069520-1|AAL39665.1| 1239|Drosophila melanogaster LD23793p
           protein.
          Length = 1239

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 127 VNAPPPP*HINSKVSSIVTVAAPPSKPKRITASRQK*VGW 246
           + APPP  H++S+ +       PP K +   ASR K + W
Sbjct: 229 LEAPPPKPHLSSRRAEKGPAPLPPKKDEVDEASRTKQLKW 268


>AY069223-1|AAL39368.1|  616|Drosophila melanogaster GH27072p
           protein.
          Length = 616

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 127 VNAPPPP*HINSKVSSIVTVAAPPSKPKRITASRQK*VGW 246
           + APPP  H++S+ +       PP K +   ASR K + W
Sbjct: 229 LEAPPPKPHLSSRRAEKGPAPLPPKKDEVDEASRTKQLKW 268


>AE013599-458|AAM71100.1|  616|Drosophila melanogaster CG2092-PC,
           isoform C protein.
          Length = 616

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 127 VNAPPPP*HINSKVSSIVTVAAPPSKPKRITASRQK*VGW 246
           + APPP  H++S+ +       PP K +   ASR K + W
Sbjct: 229 LEAPPPKPHLSSRRAEKGPAPLPPKKDEVDEASRTKQLKW 268


>AE013599-457|AAM71099.1| 1212|Drosophila melanogaster CG2092-PA,
           isoform A protein.
          Length = 1212

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 127 VNAPPPP*HINSKVSSIVTVAAPPSKPKRITASRQK*VGW 246
           + APPP  H++S+ +       PP K +   ASR K + W
Sbjct: 229 LEAPPPKPHLSSRRAEKGPAPLPPKKDEVDEASRTKQLKW 268


>AE013599-456|AAF59225.3| 1239|Drosophila melanogaster CG2092-PB,
           isoform B protein.
          Length = 1239

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 127 VNAPPPP*HINSKVSSIVTVAAPPSKPKRITASRQK*VGW 246
           + APPP  H++S+ +       PP K +   ASR K + W
Sbjct: 229 LEAPPPKPHLSSRRAEKGPAPLPPKKDEVDEASRTKQLKW 268


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,812,653
Number of Sequences: 53049
Number of extensions: 775742
Number of successful extensions: 1728
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1721
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4024321392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)