Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18f11
(808 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 30 0.34
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.78
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 28 1.4
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 28 1.8
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|... 28 1.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 28 1.8
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.4
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 27 3.1
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 27 4.1
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 26 5.5
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 26 5.5
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 5.5
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 26 5.5
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 26 5.5
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom... 26 5.5
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.2
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 7.2
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|... 26 7.2
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 9.6
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 25 9.6
SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual 25 9.6
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 25 9.6
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 25 9.6
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 30.3 bits (65), Expect = 0.34
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 30 INRGQYVWYCSVRRASEERCEHGIG*ASTDFHQY 131
I R +++ YCS RR S E C+H + + D +Y
Sbjct: 290 IGRSKHLGYCSSRRKSGELCKHWLDKRAGDVCEY 323
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.78
Identities = 47/188 (25%), Positives = 75/188 (39%), Gaps = 7/188 (3%)
Frame = -3
Query: 599 SNDIQKMQESVTNAVENMSNRFTDSGYGVRDCVTSHSNDVSALFHEAIT-----KATSCV 435
S + + TN + S +T + + +S S VS IT K TS
Sbjct: 578 STPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSST 637
Query: 434 SDRLKEANDQILGFTAIVNNAVQSSSKALDDMRKCTQEGSFLTTGSCLGSVALNAETKLV 255
S L N FT+ + + SSS A ++ SF + + S ++
Sbjct: 638 SIPLTSTNRTSTTFTSSTSISTSSSSTATSSTSFASESSSFYSNVT-TSSSTVSTPPPTT 696
Query: 254 SFTAQSAITTARI-SLGIASLP-ASLEVCAATSLVEAGIATSRILMEIGGCSANSVFTSL 81
SF S TT+ I S ++S+P S EV A++ I T+ G S++S +T
Sbjct: 697 SF--PSTFTTSFITSSSLSSIPNNSTEVKTASTSSGTEIKTA---STSSGSSSSSSYTPA 751
Query: 80 FGGSSHTA 57
S+ T+
Sbjct: 752 SSTSTTTS 759
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 308 TTGSCLGSVALNAETKLVSFTAQSAITTARISLGIASL 195
+T + SV+ + SFT SAI+TA+ S +++L
Sbjct: 753 STSTTTSSVSSRQSSSSSSFTPSSAISTAKSSFVLSTL 790
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -3
Query: 161 LVEAGIATSRILMEIGGCSANSVFTSLFGGSSHTAVPNVLPSVNHL 24
+V++ +A S+ GC +NSV +S++ S++ +L S H+
Sbjct: 281 VVDSRVAGSKARFARKGCQSNSVVSSVYMNGSNSVPRFILYSTTHI 326
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = -3
Query: 629 DEAKQIRDKISNDIQKMQESVTNAVENMSNRFTDSGYGVRDCVTSHSNDVSALFHE 462
D + I + ND+ Q ++ + SNR +S Y V D VT S L +
Sbjct: 260 DSSSSIVEGFENDLSPSQVTLNESSIISSNREEESFYSVHDSVTQKKTRTSWLIFQ 315
>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 27.9 bits (59), Expect = 1.8
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Frame = -3
Query: 629 DEAKQIRDKISNDIQK----MQESVTNAVENMSNRFTDSGYGVRDCVTSHSNDVSALFHE 462
D+ ++ DK+ N+I+K ++E V A+ + ++D TS + ++ HE
Sbjct: 111 DKVRKSSDKLINEIEKTKSSLREDVKTALSEVRLNLNLEKGRMKDAATSRNTNI----HE 166
Query: 461 AITKATSCVSDRLKEANDQ-------ILGFTAIVNNAV 369
TK + V KE ND GF +V++ V
Sbjct: 167 NETKILNEVDILHKEINDMKIQTNQWFTGFVGVVSSVV 204
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.9 bits (59), Expect = 1.8
Identities = 25/101 (24%), Positives = 42/101 (41%)
Frame = -3
Query: 689 LQKATDEARDAINGFTSGLQDEAKQIRDKISNDIQKMQESVTNAVENMSNRFTDSGYGVR 510
LQK E+ + S LQ EAK+ + IQ++ +T + N + D +R
Sbjct: 1486 LQKLHSESLSLMENIKSQLQ-EAKEKIQVDESTIQELDHEITASKNNYEGKLNDKDSIIR 1544
Query: 509 DCVTSHSNDVSALFHEAITKATSCVSDRLKEANDQILGFTA 387
D S ++ L + + + S V E +IL F +
Sbjct: 1545 DL----SENIEQL-NNLLAEEKSAVKRLSTEKESEILQFNS 1580
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 2.4
Identities = 30/164 (18%), Positives = 72/164 (43%)
Frame = -3
Query: 572 SVTNAVENMSNRFTDSGYGVRDCVTSHSNDVSALFHEAITKATSCVSDRLKEANDQILGF 393
S +++ + S+ + S +S S+ S+ + + ++S S ++ I
Sbjct: 154 SPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSS 213
Query: 392 TAIVNNAVQSSSKALDDMRKCTQEGSFLTTGSCLGSVALNAETKLVSFTAQSAITTARIS 213
T+ +++ SSS + + + SF+TT +++ T + + T + +++ S
Sbjct: 214 TSSSHSSSSSSSSSSSSSSRPSSSSSFITT--------MSSSTFISTVTVTPSSSSSSTS 265
Query: 212 LGIASLPASLEVCAATSLVEAGIATSRILMEIGGCSANSVFTSL 81
+ S A+L + A+ + + I+ + GC A +V +L
Sbjct: 266 SEVPSSTAALALNASKASNHTSLNAGAIVGIVIGCVAFAVVMAL 309
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -3
Query: 710 IEDFVENLQKATDEARDAINGFTSGLQDEAKQIRDKISNDIQKMQESVTNAVEN 549
IED N K +D NG + + +A++ DK+ N +K + + AVEN
Sbjct: 652 IED-KSNGSKGVSATKDVSNGKPAETKSKARKFFDKLFNRRKKRKLNKAAAVEN 704
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 423 ETIAHAARCFCYCLVKQGTNVV 488
E++ +AARCF + L K G N++
Sbjct: 155 ESLENAARCFDFVLQKSGGNIL 176
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 5.5
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -3
Query: 248 TAQSAITTARISLGIASLPASLEVCAATSLVEAGIATSR---ILMEIGGCSANSVFTSLF 78
T+ ++ TT+ S S + +S EA TS L +GG + + V++S F
Sbjct: 242 TSYASSTTSATSTSTTSGSSGSSDWGRSSFYEADSGTSDNIVFLNNMGGSAGSGVWSSCF 301
Query: 77 GGSSHTAVPN 48
G S A N
Sbjct: 302 GNSLSFAASN 311
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 632 QDEAKQIRDKISNDIQKMQESVTNAVENMSNRFTDSGYGVR 510
QDEA + D+I +I + + + V ++ TD+ VR
Sbjct: 17 QDEANDVVDRIVEEIVTDRMGIVDLVTSIGEYLTDNNISVR 57
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 26.2 bits (55), Expect = 5.5
Identities = 23/111 (20%), Positives = 45/111 (40%)
Frame = -3
Query: 395 FTAIVNNAVQSSSKALDDMRKCTQEGSFLTTGSCLGSVALNAETKLVSFTAQSAITTARI 216
+T IV++ V S+ + T + TTG S A T + + +TT+
Sbjct: 1407 YTTIVSSTVVSTVVPGSTVYPVTHVTT--TTGVSGESSAFTYTTSSTQYEPSTVVTTSYY 1464
Query: 215 SLGIASLPASLEVCAATSLVEAGIATSRILMEIGGCSANSVFTSLFGGSSH 63
+ + + + E ++T E+ TS + + G S S G +++
Sbjct: 1465 TTSVYTSAPATETVSSTEAPESSTVTSNPIYQGSGTSTWSTVRQWNGSATY 1515
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = -3
Query: 257 VSFTAQSAITTARISLGIASLPASLEVCAATSLVEAGIATSRILMEIGGCSANSVFTSLF 78
VS T + I A IS S +S A+T+ + +++ + G S ++ +TS
Sbjct: 409 VSTTINTNIVQATISQSSTSGSSSGSSSASTTASSSSVSSGSSISS-GSSSMSTSYTSAS 467
Query: 77 GGSSHTA 57
G S+H++
Sbjct: 468 GSSAHSS 474
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.2 bits (55), Expect = 5.5
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +1
Query: 112 PPISINILDVAIPASTRLVAAQTSNDAGSDAIPKLMRAVVI----ALCAVKLTSLVSAFR 279
PP+SI+ +A AST V+A + S + P + + A+ + LTS F
Sbjct: 209 PPVSISPSFIASAASTSSVSAPSQYPGLSRSPPVQAPNIPVSDPWAIPSQDLTSFCQLFS 268
Query: 280 ATDPRHEPVVRKLPSWVHFLMS 345
D H+ V ++ FL S
Sbjct: 269 NVDKAHKGYVSGSEAYSFFLAS 290
>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = -3
Query: 653 NGFTSGLQDEAKQIRDKISNDIQKMQESVTNAVENMSNRFTDSGYGVRDCVTSHSND 483
N F L + AKQ D I + + ++QE N + N + + C++S D
Sbjct: 261 NTFLGELFNAAKQTSDSIDDIVAQIQEDDENFENELDNFHRSARNLCKICISSAQED 317
>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/70 (24%), Positives = 30/70 (42%)
Frame = -3
Query: 440 CVSDRLKEANDQILGFTAIVNNAVQSSSKALDDMRKCTQEGSFLTTGSCLGSVALNAETK 261
C+ D + N IL I+ N QSS +A+ +++ SF S +N+
Sbjct: 305 CIEDLHESVNLDILCLKDILRNIAQSSKEAMYIVKRHNSSQSFYGNRSTTNFSIINSGLY 364
Query: 260 LVSFTAQSAI 231
L A++ +
Sbjct: 365 LKKDAAKNLL 374
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -3
Query: 722 TRKLIEDFVENLQKATDEARDAINGFTSGLQDEAKQIRDKISNDIQKMQES 570
T + E + + L+KATD + + F + + + N IQK +ES
Sbjct: 338 TLSVSEHWEDLLRKATDSCQKELEAFEEISNLRVLAVENSLGNLIQKAEES 388
>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 162
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = -3
Query: 707 EDFVENLQKAT--DEAR--DAINGFTSGLQDEAKQIRDKISNDIQKMQE 573
E FV +LQ++T D +R D N +QDE KQ++ + I +QE
Sbjct: 20 EKFVRHLQESTETDTSRYMDMENYIQKRVQDELKQLQLRQKKAIDAIQE 68
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 9.6
Identities = 25/83 (30%), Positives = 35/83 (42%)
Frame = -3
Query: 596 NDIQKMQESVTNAVENMSNRFTDSGYGVRDCVTSHSNDVSALFHEAITKATSCVSDRLKE 417
ND+ +E V N SN ++ G V V HS+ S F S+ L
Sbjct: 435 NDLMDEEEVVEN-----SNMYSIPGKTVATTVC-HSSSSSGDFSALSCHRNLSFSESLPT 488
Query: 416 ANDQILGFTAIVNNAVQSSSKAL 348
A DQ+ V+ + +SSS AL
Sbjct: 489 AEDQVHNNHCAVSPSRRSSSNAL 511
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 557 VENMSNRFTDSGYGVRDCVTSHSNDV 480
+ N+SN F S ++CV SH +++
Sbjct: 8 IRNVSNEFNFSFQSFKECVLSHGSNL 33
>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 9.6
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -3
Query: 371 VQSSSKALDDMRKCTQEGSFLTTGSC 294
V S + ++D+MR+C + G ++ C
Sbjct: 186 VHSFTGSIDEMRRCIEHGLYVGVNGC 211
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +3
Query: 555 YSVCDAFLHFLY---IV*DF-VPDLLCFIL*SRCEPIDGISGFICCFLQIFHEVFN 710
+ C AFLH++Y + + LC +L C+ +G+ F + + H V N
Sbjct: 509 FETCSAFLHYIYCGTLNGSYCTAKNLCNLL-ILCKGFEGLETFFAYIVHLLHGVLN 563
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 187 DAGSDAIPKLMRAVVIALCAVKLTSLVSAFRATD 288
D+G A L+R V+ A+C V + + +F TD
Sbjct: 50 DSGVSAWKVLLRQVLNAMCVVLILAAALSFGTTD 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,300,099
Number of Sequences: 5004
Number of extensions: 66237
Number of successful extensions: 255
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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