Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18f11
(808 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 33 0.27
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421... 33 0.35
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928... 32 0.47
01_06_1830 + 40194257-40194472,40195797-40196159,40196420-40196950 32 0.62
09_04_0693 - 19518331-19518426,19518541-19518705,19518811-195188... 30 2.5
03_02_0489 + 8836306-8836500,8836906-8837082,8837175-8837321,883... 30 2.5
04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733... 29 3.3
04_04_0333 - 24481029-24481109,24481185-24481253,24481785-244818... 29 4.4
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402... 29 4.4
06_02_0303 + 14022428-14022652,14023247-14024159,14024310-140247... 29 5.8
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 28 7.6
>01_06_1713 -
39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 33.1 bits (72), Expect = 0.27
Identities = 26/117 (22%), Positives = 52/117 (44%)
Frame = -3
Query: 725 NTRKLIEDFVENLQKATDEARDAINGFTSGLQDEAKQIRDKISNDIQKMQESVTNAVENM 546
N +K +ED + + + A EA + T+ + K+++DK + + K E+ A EN
Sbjct: 391 NEKKCLEDQLRDAKAAVGEAESGLKQLTTKISHSEKELKDKKAQLVSKRDEA--TAAENE 448
Query: 545 SNRFTDSGYGVRDCVTSHSNDVSALFHEAITKATSCVSDRLKEANDQILGFTAIVNN 375
V+ + S + + + EA+ K S D +++ D+I + + N
Sbjct: 449 LKAREKDLETVKASMQSVNYEEGQM--EALQKDRSIELDAVQKLKDKIRALSGELAN 503
>01_01_0568 -
4207812-4209587,4210056-4210291,4210647-4210793,
4211857-4212145
Length = 815
Score = 32.7 bits (71), Expect = 0.35
Identities = 28/130 (21%), Positives = 60/130 (46%), Gaps = 2/130 (1%)
Frame = -3
Query: 716 KLIEDFVENLQKATDEARDAINGFTSGLQDEAKQIRDKISNDIQKMQESVTNAVENMSNR 537
K + + +++ ++A ++R ++ + L DEA ++ + I K+Q+ E ++N+
Sbjct: 501 KSLRESLQSTEEALTDSRSEVSKLSVEL-DEANRMNQDLVLQISKLQDEFNEMQEGLTNK 559
Query: 536 FTDSGYGVRDCVTSHSNDVSALFH--EAITKATSCVSDRLKEANDQILGFTAIVNNAVQS 363
+ V ++ V + H + +ATS + EA D + V ++S
Sbjct: 560 LGEV-ESVSKALSDELVSVKEMVHKGQEELEATSNELASIVEARDNLKKELLDVFKKLES 618
Query: 362 SSKALDDMRK 333
+S+ L D RK
Sbjct: 619 TSQELVDERK 628
>02_05_0717 +
31190626-31191234,31191954-31192394,31192699-31192802,
31193000-31194384,31194508-31194548,31195065-31195133,
31195335-31195435,31195747-31195825,31195939-31196037,
31196119-31196187,31197609-31197658,31197749-31197925,
31198045-31198152,31198224-31198290
Length = 1132
Score = 32.3 bits (70), Expect = 0.47
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Frame = +1
Query: 76 PKRDVNTELAEHPPISIN-ILDVAIPASTRLVAAQTSNDAGSDAIPKLMRAVVIALCAVK 252
P ++ +++L + P++ + A+ AS+ +VAA SN+ + +P A V A V
Sbjct: 680 PPQEASSQLTKQLPVTAAAVATAAVVASSMVVAAAKSNNDVNFDVPVAAAATVTAAAVVA 739
Query: 253 LTSLVS-AFRATDPRHEPVVRKLPS 324
T+ VS + +P ++ + LPS
Sbjct: 740 TTAAVSKQYEHLEPGNQ--LHSLPS 762
>01_06_1830 + 40194257-40194472,40195797-40196159,40196420-40196950
Length = 369
Score = 31.9 bits (69), Expect = 0.62
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = -3
Query: 209 GIASLPASLEVCAATSLVEAGIATSRILMEIGGCSANS 96
G +PA+ EVC + + GIA+SRI E+ G S NS
Sbjct: 36 GSPEMPAAAEVCNCSQI---GIASSRISEEVTGTSGNS 70
>09_04_0693 -
19518331-19518426,19518541-19518705,19518811-19518894,
19518986-19519054,19519176-19519241,19519347-19519484,
19519636-19519866
Length = 282
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Frame = -3
Query: 614 IRDKISNDIQKMQESVTNAVENMSNRFTDS-----GYGV-RDCVTSHSNDVSALFHEAIT 453
I D+I N +Q +Q N VE +S R G+G+ D + HS + +FHEA+
Sbjct: 152 ILDEIINYVQSLQ----NQVEFLSMRIASLSPVLYGFGIDSDAFSDHSQKMEGMFHEAVA 207
Query: 452 KATSCVS 432
S ++
Sbjct: 208 IPASVLN 214
>03_02_0489 +
8836306-8836500,8836906-8837082,8837175-8837321,
8837636-8837737,8837824-8837894,8837992-8838059,
8838595-8838836
Length = 333
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 234 STLCSKTDKLGFRVQSYGSKTRARCKKTSFLGTFPHVIQ 350
ST+ D + R+Q G+ RAR +T GTF H+++
Sbjct: 252 STITFPLDLVRRRMQLEGAAGRARVYQTGLFGTFGHIVR 290
>04_03_0927 + 20871487-20871903,20872667-20872812,20873204-20873301,
20873378-20873572,20873670-20873797,20873892-20874050,
20875119-20875223,20875449-20875559,20875653-20875790,
20875909-20876091,20876362-20876517,20876615-20876738,
20876820-20877030,20877614-20877729,20877828-20878053,
20878218-20878311,20879198-20879275,20879822-20879971,
20880086-20880292,20880584-20880788,20880990-20881096
Length = 1117
Score = 29.5 bits (63), Expect = 3.3
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Frame = -3
Query: 635 LQDEAKQ-IRDKISNDIQKMQESVTNAVENMSNRFTDSGYGVRDCVTSHSNDVSALFHEA 459
L EA+Q +R N ++K ESVT A+EN + + G D + VS +
Sbjct: 957 LSTEAEQALRSLQENLLEKACESVTEALENPGHHRRPT-RGSEDAASDDRQSVSP--DDL 1013
Query: 458 ITKATSCVSDRLK-EANDQILGFTAIVNNAVQSS 360
+ A C SD L+ E L + + +QS+
Sbjct: 1014 LALAQQCSSDLLQGELEKTRLNIACFMESTLQST 1047
>04_04_0333 -
24481029-24481109,24481185-24481253,24481785-24481853,
24481923-24481944,24482302-24482393,24482688-24482803,
24482899-24483042,24483287-24483476
Length = 260
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = -3
Query: 788 GNPADAYHPAILGQRELDLYGNTRKLIEDFVENLQKATDEARDAINGFTSGL-QDEAKQI 612
GN A P + + L K EDF +++++A +A D I SG+ +D+ K++
Sbjct: 172 GNRIIANIPPLTKENIQALCKVVTKSAEDFKQSIRRARQKALDTIKKSASGMPKDDVKRL 231
Query: 611 RDKISNDIQKMQES 570
++ +K +S
Sbjct: 232 EKEVEELTKKFIKS 245
>01_07_0306 +
42638683-42638990,42639074-42639314,42639935-42640236,
42640431-42640607,42640853-42641617,42641697-42641791,
42641889-42641951,42642047-42642135,42642229-42642324,
42642457-42643104,42643596-42643628,42643838-42643912,
42644442-42644603,42644604-42644674,42644758-42644815,
42645196-42645394,42645487-42645552,42645699-42646183
Length = 1310
Score = 29.1 bits (62), Expect = 4.4
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 2/125 (1%)
Frame = -3
Query: 779 ADAYHPAILGQRELDLYGNTRKLIEDFVENLQKATDEARDAI-NGFTSGLQDEAKQIRDK 603
A + H IL D+ G + ED E L A + AR AI N + + + +
Sbjct: 613 ASSRHSEILNCGLTDISGES----EDDREELLAAANAARSAIVNAYAGPFWKKIEPMLTF 668
Query: 602 ISN-DIQKMQESVTNAVENMSNRFTDSGYGVRDCVTSHSNDVSALFHEAITKATSCVSDR 426
IS+ D+ ++ +T E S + T++S +S + ++ ++ SCVS
Sbjct: 669 ISSEDLSFLKHQITFLEELEMGMSKSSDEHNLNTSTNYSGPLSMGQNSSLPQSNSCVSLE 728
Query: 425 LKEAN 411
EAN
Sbjct: 729 QSEAN 733
>06_02_0303 +
14022428-14022652,14023247-14024159,14024310-14024700,
14024949-14025206,14025284-14025394,14025486-14025564,
14025842-14026027
Length = 720
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -2
Query: 246 CTECYNDCSHQLGNSIAASIIRGLRSNKPCRSWYSH 139
C +N+C HQLG + GL N +W H
Sbjct: 683 CYFIHNECCHQLGRFFDKEGLLGLPENDILSNWSKH 718
>02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +3
Query: 372 SVVDDCSESKDLVVCFFETIAHAARCFCYCLVKQGTNVVT 491
S D C S + FF + H CF Y L+ G + T
Sbjct: 1034 SSTDTCVMSVRFLFLFFSILLHQHWCFAYLLINMGIYLST 1073
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,574,340
Number of Sequences: 37544
Number of extensions: 435521
Number of successful extensions: 1482
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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