Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f11
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     26   0.36 
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    26   0.47 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    26   0.47 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.5  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   2.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   5.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   7.7  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 455 TKATSCVSDRLKEANDQILGFTAIVNNAVQSSSKALDDMRKCTQE 321
           +K  +     ++E+N+    FT I NN +Q     L++M K T+E
Sbjct: 557 SKGINAEPSNIEESNNMTDSFTRIANNTIQ-ELYTLNNMYKPTRE 600


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 541 LDIFSTAFVTLSCIFCISFEILSLICFASSCSPDVNPLMASLASSVAFCRFSTKSSI 711
           L  F+   V   C  CI   + S++ +   C+  +NP + +L S     RF+ KS I
Sbjct: 23  LPFFTMYLVRAFCRNCIHPTVFSVLFWLGYCNSAINPCIYALFSK--DFRFAFKSII 77


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 541 LDIFSTAFVTLSCIFCISFEILSLICFASSCSPDVNPLMASLASSVAFCRFSTKSSI 711
           L  F+   V   C  CI   + S++ +   C+  +NP + +L S     RF+ KS I
Sbjct: 471 LPFFTMYLVRAFCRNCIHPTVFSVLFWLGYCNSAINPCIYALFSK--DFRFAFKSII 525


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 653 NGFTSGLQDEAKQIRDKISNDIQKMQESVTNAVENMSNRF 534
           NG T   +D  +++ D   N I   +   + + E+ SN+F
Sbjct: 427 NGLTEPKKDNKRKLSDSTMNKINNHEYKRSVSRESNSNQF 466


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 728 GNTRKLIEDFVENLQKATDEARDAING 648
           G  RK+ E FV+  +K ++  ++ +NG
Sbjct: 269 GRNRKICEAFVKTGKKISELEKEMLNG 295


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 257 VSFTAQSAITTARISLGIASLPASLEVCAATSLVEAGI 144
           VSF    +   AR+SLG+ +L   L +   TS + A +
Sbjct: 261 VSFWLDQSAVPARVSLGVTTL---LTMATQTSGINASL 295


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 257 VSFTAQSAITTARISLGIASLPASLEVCAATSLVEAGI 144
           VSF    +   AR+SLG+ +L   L +   TS + A +
Sbjct: 261 VSFWLDQSAVPARVSLGVTTL---LTMATQTSGINASL 295


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +1

Query: 550 FSTAFVTLSCIFCISFEILSLICFASSCSPDVNPLMASLASS---VAFCRFSTKSS 708
           F    VT  C  CIS     ++ +    +   NP++ S+ ++    AF R  TK +
Sbjct: 289 FCVNIVTSYCKTCISGRAFQVLTWLGYSNSAFNPIIYSIFNTEFREAFKRILTKGA 344


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 257 VSFTAQSAITTARISLGIASLPASLEVCAATSLVEAGIA-TSRILMEIGGCSANSVFTSL 81
           VSF      T AR++LG+ ++     + ++T+     I+    I + +G C    VF SL
Sbjct: 240 VSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFV-MVFASL 298


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 257 VSFTAQSAITTARISLGIASLPASLEVCAATSLVEAGIA-TSRILMEIGGCSANSVFTSL 81
           VSF      T AR++LG+ ++     + ++T+     I+    I + +G C    VF SL
Sbjct: 240 VSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFV-MVFASL 298


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 257 VSFTAQSAITTARISLGIASLPASLEVCAATSLVEAGIA-TSRILMEIGGCSANSVFTSL 81
           VSF      T AR++LG+ ++     + ++T+     I+    I + +G C    VF SL
Sbjct: 179 VSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFV-MVFASL 237


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 269 ETKLVSFTAQSAITTARISLGIASLPASLEVCAATSLVEAGIATSRI 129
           E   VSFTA  A      S+G AS+P++  +     L   G+ T+ I
Sbjct: 423 EVITVSFTATLA------SIGAASIPSAALITMLIVLTALGLPTNDI 463


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,717
Number of Sequences: 438
Number of extensions: 4377
Number of successful extensions: 20
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)