Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f08
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...   277   2e-75
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...   210   2e-55
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...    28   1.3  
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...    28   1.8  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    27   2.4  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   2.4  
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    26   5.4  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    26   7.2  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    26   7.2  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   9.5  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score =  277 bits (678), Expect = 2e-75
 Identities = 117/197 (59%), Positives = 155/197 (78%)
 Frame = -3

Query: 779 DINVGILDADXCGXSQPRVLGVRGEQVHNSGSGWSPVYVTDNLSLMSIGFLLGSPDDAVI 600
           D  +G++D D CG S PR++GV  E+ H S  GWSP+YV  NL++MSIGFLL S D +VI
Sbjct: 90  DKQIGLMDVDICGPSIPRIMGVEKEEAHQSSKGWSPIYVCPNLAVMSIGFLLPSEDSSVI 149

Query: 599 WRGPKKNGMIKQFLSEVDWGDLDYLLIDTPPGTSDEHLSAVQYLAQAQVSGALLVTTPQE 420
           WRGPKKNG+IKQF+ +V+W +LDYL++DTPPGTSDEHLS VQ+   + + GA++VTTPQE
Sbjct: 150 WRGPKKNGLIKQFIKDVNWENLDYLIVDTPPGTSDEHLSLVQFFKNSGIDGAVVVTTPQE 209

Query: 419 LSLLDVRKEIDFCRKVGLRVLGVVENMSLFVCPNCKSRSEIFPATSGGAAAMCRELRVPL 240
           ++L DVRKEIDFCRK  + +LG+VENMS FVCP+CK +S IF  T+GG  A+ +E+ +P 
Sbjct: 210 VALQDVRKEIDFCRKASIPILGLVENMSGFVCPSCKGKSNIFTITTGGGEALAKEMGLPF 269

Query: 239 LGALPLEPRLARACDSG 189
           LG +PL+P +AR+CD G
Sbjct: 270 LGKIPLDPLIARSCDFG 286


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score =  210 bits (512), Expect = 2e-55
 Identities = 96/206 (46%), Positives = 141/206 (68%), Gaps = 11/206 (5%)
 Frame = -3

Query: 776 INVGILDADXCGXSQPRVLGVRGEQ--VHNSGSGWSPVYV--TDNLSLMSIGFLLGSPDD 609
           +  GILD D  G S PR+ G   E+  +H S +GW PVY   T  + LMS+GFLL S +D
Sbjct: 40  LKTGILDIDLTGPSIPRMFGKDAERNRIHQSSAGWVPVYTDETKEIGLMSLGFLLTSKND 99

Query: 608 AVIWRGPKKNGMIKQFLSEVDWGDLDYLLIDTPPGTSDEHLSAVQYL-------AQAQVS 450
           +V+WRGPKK  MI+QF+S+V WG+LD+L+IDTPPGT DEHL+ V+ L           + 
Sbjct: 100 SVVWRGPKKAAMIRQFISDVSWGELDFLIIDTPPGTGDEHLTIVESLLSETSTVRDVPID 159

Query: 449 GALLVTTPQELSLLDVRKEIDFCRKVGLRVLGVVENMSLFVCPNCKSRSEIFPATSGGAA 270
           GA++VTTPQ ++ LDV+KEIDFC+K  +++LG+VENMS ++CP+C   + IF  +SGG  
Sbjct: 160 GAVIVTTPQGIATLDVQKEIDFCKKASIKILGIVENMSGYICPHCADCTNIF--SSGGGL 217

Query: 269 AMCRELRVPLLGALPLEPRLARACDS 192
            +  + ++P LG++P++P+     ++
Sbjct: 218 TLSEKYKLPFLGSVPIDPKFGEMIEN 243


>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 22/87 (25%), Positives = 37/87 (42%)
 Frame = +3

Query: 417 EFLRRGDQQRARHLRLRQVLHRGQVFVRRTGRRIYEQVVQVSPVHFAQELLDHTVLLRSP 596
           +FL R  Q +   L L + +H  +V + +   R+ +Q+V V       +   H     S 
Sbjct: 103 DFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSS 162

Query: 597 PYDGVVGTAQQEPDRHQRQVIRNVNRG 677
           PY G        P R +R+ +R+   G
Sbjct: 163 PYGG------GRPGRCKRKRLRSQQEG 183


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +3

Query: 417 EFLRRGDQQRARHLRLRQVLHRGQVFVRRTGRRIYEQVVQVSPVHFAQELLDHTVLLRSP 596
           +FL R  Q +   L L + +H  +V + +   R+ +Q+V V       +   H     S 
Sbjct: 103 DFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSS 162

Query: 597 PYDG 608
           PY G
Sbjct: 163 PYGG 166


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = -3

Query: 500 SDEHLSAVQYLAQAQVSGALLVTTPQELSLLDVRKEIDFCRKVGLRVLGVVENMSLFVCP 321
           SDE L   ++  Q  +          E+ +LD + E   CRK   R+L ++  + LF   
Sbjct: 15  SDEKLDKKEWDQQLPIDFGEGEDVTTEVYILDHKAERRLCRKFDFRILPLLALLYLF--- 71

Query: 320 NCKSRSEIFPATSGG 276
           N   +S +  A + G
Sbjct: 72  NALDKSNVSNAKTNG 86


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 610 SSGLPNRNPIDISDKLSVT*TGDHPEPELWTCSP 711
           S+GL   N I+ ++  S+    DH EPE + C+P
Sbjct: 41  SNGLQQTNQIEQAES-SLNAEADHSEPERYGCTP 73


>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = -3

Query: 206 RACDSGXXXXXXXXXXXXXANTHDALREILDKIVAACENSN 84
           R CD+G              NT  A R  L +IV  C N +
Sbjct: 175 RICDTGVRAITVHCRTTPMRNTEPADRSYLSEIVGVCRNKD 215


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 539 DLDYLLIDTPPGTSDEHLS 483
           D+ +L++DTP   +DEHL+
Sbjct: 538 DILFLILDTPSRETDEHLA 556


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 701  PALRGRPTLAAGSXRXCRHRVYLRLYQXLID 793
            PA   RP  A  + R   HR+Y RL   LID
Sbjct: 1279 PAFTLRPGAATYNVRKQDHRLYTRLDNKLID 1309


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 521 IDTPPGTSDEHLSAVQYLAQAQVSG 447
           ++ PPGT   HL    Y   AQ++G
Sbjct: 898 VEYPPGTKAFHLGEYNYGRPAQITG 922


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,764
Number of Sequences: 5004
Number of extensions: 43579
Number of successful extensions: 138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)