Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18f08
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842 231 5e-61
04_04_0299 - 24243364-24244259,24244417-24244428,24245092-242451... 230 8e-61
01_06_0521 + 30001662-30001752,30001883-30001999,30002099-300022... 109 2e-24
03_05_0387 + 23708447-23708470,23708616-23708739,23709081-237092... 91 1e-18
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 32 0.61
08_01_0102 - 735359-735370,735371-735455,735531-735616,735697-73... 31 0.80
06_03_0640 - 23059473-23060489,23060592-23060651,23063163-230632... 31 0.80
06_01_0042 + 410061-410544,411401-411837 31 0.80
05_03_0269 + 11333823-11334639,11334714-11334775 31 1.4
08_02_1478 - 27386280-27387046,27388154-27388201,27388631-27388724 24 2.4
07_01_1147 + 10771305-10771619,10771991-10772077 30 2.5
06_01_0963 + 7411944-7412396,7412677-7412736,7412828-7413010,741... 29 3.2
06_03_0473 + 21190878-21191188,21191269-21192355,21192972-211931... 28 9.9
04_04_1166 - 31427523-31428154,31428888-31429020 28 9.9
>02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842
Length = 355
Score = 231 bits (565), Expect = 5e-61
Identities = 97/149 (65%), Positives = 125/149 (83%)
Frame = -3
Query: 782 LDINVGILDADXCGXSQPRVLGVRGEQVHNSGSGWSPVYVTDNLSLMSIGFLLGSPDDAV 603
+D VG+LD D CG S P++LG+ G+ +H S GWSPVYV NL +MSIGF+L +PDDAV
Sbjct: 97 MDCQVGLLDIDICGPSIPKMLGLEGQDIHQSNLGWSPVYVESNLGVMSIGFMLPNPDDAV 156
Query: 602 IWRGPKKNGMIKQFLSEVDWGDLDYLLIDTPPGTSDEHLSAVQYLAQAQVSGALLVTTPQ 423
IWRGP+KNG+IKQFL +VDWG++DYL++D PPGTSDEH+S VQYL + GA++VTTPQ
Sbjct: 157 IWRGPRKNGLIKQFLKDVDWGEIDYLVVDAPPGTSDEHISIVQYLQATGIDGAIIVTTPQ 216
Query: 422 ELSLLDVRKEIDFCRKVGLRVLGVVENMS 336
++SL+DVRKEI+FC+KVG+ +LGVVENMS
Sbjct: 217 QVSLIDVRKEINFCKKVGVPILGVVENMS 245
Score = 48.4 bits (110), Expect = 7e-06
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = -3
Query: 305 SEIFPATSGGAAAMCRELRVPLLGALPLEPRLARACDSG 189
SE+F ++ GGA MC E+ VP LG +P++P+L +A + G
Sbjct: 289 SEVFDSSKGGAEKMCNEMGVPFLGKVPMDPQLCKAAEEG 327
>04_04_0299 -
24243364-24244259,24244417-24244428,24245092-24245193,
24245298-24245340
Length = 350
Score = 230 bits (563), Expect = 8e-61
Identities = 98/149 (65%), Positives = 126/149 (84%)
Frame = -3
Query: 782 LDINVGILDADXCGXSQPRVLGVRGEQVHNSGSGWSPVYVTDNLSLMSIGFLLGSPDDAV 603
+D VG+LD D CG S P++LG+ G+ +H S GWSPVYV NL +MSIGF+L +PDDAV
Sbjct: 93 MDHQVGLLDIDICGPSIPKMLGLEGQDIHQSNLGWSPVYVESNLGVMSIGFMLPNPDDAV 152
Query: 602 IWRGPKKNGMIKQFLSEVDWGDLDYLLIDTPPGTSDEHLSAVQYLAQAQVSGALLVTTPQ 423
IWRGP+KNG+IKQFL +VDWG++DYL++D PPGTSDEH+S VQYL A + GA++VTTPQ
Sbjct: 153 IWRGPRKNGLIKQFLKDVDWGEIDYLVVDAPPGTSDEHISIVQYLQIAGIDGAIIVTTPQ 212
Query: 422 ELSLLDVRKEIDFCRKVGLRVLGVVENMS 336
++SL+DV+KEI+FC+KVG+ VLGVVENMS
Sbjct: 213 QVSLIDVKKEINFCKKVGVPVLGVVENMS 241
Score = 49.6 bits (113), Expect = 3e-06
Identities = 18/39 (46%), Positives = 29/39 (74%)
Frame = -3
Query: 305 SEIFPATSGGAAAMCRELRVPLLGALPLEPRLARACDSG 189
SE+F ++ GGA MC+E+ VP LG +P++P+L +A + G
Sbjct: 285 SEVFDSSKGGAEKMCQEMEVPFLGKVPMDPQLCKAAEEG 323
>01_06_0521 +
30001662-30001752,30001883-30001999,30002099-30002229,
30002320-30002370,30002639-30002689,30002864-30003007,
30003082-30003224,30003376-30003448,30003540-30003635,
30003737-30003835,30003905-30003958,30004032-30004155,
30004420-30004544,30004720-30004842,30004948-30005028
Length = 500
Score = 109 bits (263), Expect = 2e-24
Identities = 69/195 (35%), Positives = 105/195 (53%), Gaps = 1/195 (0%)
Frame = -3
Query: 770 VGILDADXCGXSQPRVLGVRGEQVHNSGSGWSPVYVTDNLSLMSIGFLLGSPDDAVIWRG 591
VGI DAD G S P ++ + + S + T+ L + + F A++ RG
Sbjct: 170 VGIFDADVFGPSLPTMVSPENRLLVMNPESRS-ILPTEYLGVKMVSFGFAGQGRAIM-RG 227
Query: 590 PKKNGMIKQFLSEVDWGDLDYLLIDTPPGTSDEHLSAVQYLAQAQVSGALLVTTPQELSL 411
P +G+I Q L+ DWG+LDYL+ID PPGT D HL+ Q + A ++ A++VTTPQ+L+
Sbjct: 228 PMVSGVINQLLTTTDWGELDYLVIDMPPGTGDIHLTLCQVV--APLTAAVIVTTPQKLAF 285
Query: 410 LDVRKEIDFCRKVGLRVLGVVENMSLFVCPNCKSRSEIFPATSGG-AAAMCRELRVPLLG 234
+DV K + K+ + + VVENM F R F SG A + ++ +P L
Sbjct: 286 IDVAKGVRMFSKLKVPCVAVVENMCYFDADG--KRFYPFGQGSGAQARKVVQQFGIPHLF 343
Query: 233 ALPLEPRLARACDSG 189
LP+ P L+ + D+G
Sbjct: 344 DLPIRPTLSASGDTG 358
>03_05_0387 +
23708447-23708470,23708616-23708739,23709081-23709203,
23710723-23710820,23711778-23711918,23712236-23712361,
23713316-23713486
Length = 268
Score = 90.6 bits (215), Expect = 1e-18
Identities = 67/198 (33%), Positives = 92/198 (46%), Gaps = 2/198 (1%)
Frame = -3
Query: 776 INVGILDADXCGXSQPRVLGVRGEQVHNSGSGWSPVYVTDNLSL--MSIGFLLGSPDDAV 603
+ VG+LDAD G S P ++ + + + PV DN + MSIGFL+ D +
Sbjct: 62 LKVGLLDADIYGPSIPTMMNLHAKPEVSEDMRMIPV---DNYGVQCMSIGFLVDK-DAPI 117
Query: 602 IWRGPKKNGMIKQFLSEVDWGDLDYLLIDTPPGTSDEHLSAVQYLAQAQVSGALLVTTPQ 423
+WRGP +++ V WG+LD L++D PPGT D LS Q
Sbjct: 118 VWRGPMVMSALEKITRGVAWGNLDILVVDMPPGTGDAQLS-----------------MSQ 160
Query: 422 ELSLLDVRKEIDFCRKVGLRVLGVVENMSLFVCPNCKSRSEIFPATSGGAAAMCRELRVP 243
L L + K I LG+VENMS F CP C +S IF GG E+ +
Sbjct: 161 RLRLSGIYKSI----------LGLVENMSCFKCPKCGEKSYIF--GEGGGQRTAEEMDMK 208
Query: 242 LLGALPLEPRLARACDSG 189
L+G +PLE + D G
Sbjct: 209 LIGEIPLEIDIRTGSDEG 226
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 31.9 bits (69), Expect = 0.61
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -3
Query: 692 SGSGWSPVYVTDNLSLMSIGFLLGSPDDAVIWRGPKKNGMIKQ-FLSEVDWGDLDYLLID 516
S GW + + +S G P + IW GP + ++ + E +G LD LL+
Sbjct: 399 SSMGWLTKFFRGSTHKISEGQYHSKPAEETIWNGPSNSAVVTMVYPLESTFGQLDLLLLA 458
Query: 515 T 513
T
Sbjct: 459 T 459
>08_01_0102 -
735359-735370,735371-735455,735531-735616,735697-735779,
736790-737048,737132-737300,738554-738698,738782-739004
Length = 353
Score = 31.5 bits (68), Expect = 0.80
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 547 STSLRNCLIIPFFFGPLHMTASSGLPNRNPIDI 645
+ SL L++P+F PLH TA++ + +P D+
Sbjct: 22 AASLAAVLLLPYFSPPLHATAAASPSSHSPFDV 54
>06_03_0640 - 23059473-23060489,23060592-23060651,23063163-23063283,
23063476-23065496
Length = 1072
Score = 31.5 bits (68), Expect = 0.80
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +3
Query: 342 VLDDPEHPEPDFATEVNLFANVEQREFLRRGDQQRARHLRLRQVLHRGQVFVRRTGRR 515
V +D + PE DF T N ANV R QQ ++ R V H ++ VR+ G R
Sbjct: 858 VREDDDLPEYDFVTVPNAAANVVPSRQAHRSQQQHSQAASRRPVDHVREM-VRKYGSR 914
>06_01_0042 + 410061-410544,411401-411837
Length = 306
Score = 31.5 bits (68), Expect = 0.80
Identities = 28/114 (24%), Positives = 51/114 (44%)
Frame = -3
Query: 530 YLLIDTPPGTSDEHLSAVQYLAQAQVSGALLVTTPQELSLLDVRKEIDFCRKVGLRVLGV 351
++LID P G ++A+ A A+LVTTP +L D + G++ + +
Sbjct: 154 FILIDCPAGVDAGFVTAI-----APAEEAVLVTTPDITALRDADRVAGLLECDGIKDIKI 208
Query: 350 VENMSLFVCPNCKSRSEIFPATSGGAAAMCRELRVPLLGALPLEPRLARACDSG 189
+ N V P+ ++ A + L +PLLG +P + + R+ + G
Sbjct: 209 IVNR---VRPDLVKGEDMMSALD-----VQEMLGLPLLGVVPEDAEVIRSTNRG 254
>05_03_0269 + 11333823-11334639,11334714-11334775
Length = 292
Score = 30.7 bits (66), Expect = 1.4
Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Frame = -3
Query: 467 AQAQVSGALLVTTPQELSLLDVRKEIDFCRKVGLRVL--GVVENMSLFVCPNCKSRSE-- 300
A A S A V P+ +L C GL V V + + FVCP+C + +E
Sbjct: 70 ASASASAATAVQEPRLDPILSPPGPTAACSSCGLFVAHHSCVPDSASFVCPSCAAAAEGK 129
Query: 299 ---IFPATSGGAAAMCRELRVPLLGALPLEPRLARA 201
PA G A R RV L+ A +ARA
Sbjct: 130 PFSYTPAGGGRRALDERAARVLLVAARLAHDSVARA 165
>08_02_1478 - 27386280-27387046,27388154-27388201,27388631-27388724
Length = 302
Score = 24.2 bits (50), Expect(2) = 2.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 268 AAAPPDVAGKISLRLLQLGHTNSDMF 345
AA PPD + ++ LLQ G + D+F
Sbjct: 141 AADPPDAVVRRAMHLLQNGFGSYDVF 166
Score = 24.2 bits (50), Expect(2) = 2.4
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Frame = +1
Query: 466 ARYCTADRCSSDVPGGVSMSK*SKSPQSTSLRNCLIIPFFF---GPLHMTA 609
A YC +D PG + S + S L L PF GPL M A
Sbjct: 174 ALYCKTGLLPADEPGSIGRSGQASSAIGVPLAALLSTPFKLLAAGPLGMAA 224
>07_01_1147 + 10771305-10771619,10771991-10772077
Length = 133
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 766 VYSMPTXAARASRECWASAESRSTTPARGG 677
V + P AA S E WA+A R+TTP+ G
Sbjct: 72 VAASPAAAAAGSGEQWATATGRATTPSNLG 101
>06_01_0963 +
7411944-7412396,7412677-7412736,7412828-7413010,
7413259-7413339,7414219-7414541,7414961-7415084
Length = 407
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 689 GSGWSPVYVTDNLSLMSIGFLLGSPDDA-VIWRGPK 585
G+GW +VTD + M +GFL P+ A +I RG K
Sbjct: 235 GAGWETPWVTDFTTGMGVGFLNWHPNAAYMIIRGLK 270
>06_03_0473 +
21190878-21191188,21191269-21192355,21192972-21193194,
21193286-21193356,21193385-21193441,21193442-21194056,
21194168-21194237,21194470-21194745,21194916-21195130,
21195224-21195529,21195750-21195813,21195902-21196141,
21196306-21196415
Length = 1214
Score = 27.9 bits (59), Expect = 9.9
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = -3
Query: 596 RGPKKNGMIKQF--LSEVDWGDLDYLLIDTPPGTSDEHLSAVQYLAQAQVSGALLVTTPQ 423
RG +G KQ L+ + D D L+D P D H +AV + +A +++ T Q
Sbjct: 494 RGINMSGGQKQRIQLARAVYSDADVYLLDDPFSAVDAHTAAVLFYVRALSEKTVVLVTHQ 553
Query: 422 ELSLLDVRKEIDFCR 378
L + + + + R
Sbjct: 554 VEFLTETDRILPYQR 568
>04_04_1166 - 31427523-31428154,31428888-31429020
Length = 254
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 731 PRVLGVRGEQVHNSGSGWSPVYVTDNLSLMSIGFLLGSPDDAVIWRGP 588
P+ LGV G V+ GS +PV V + L ++G D A + P
Sbjct: 66 PKALGVPGNTVNAQGSAVTPVTVNELPGLNTLGISFARIDFAPNGQNP 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,038,709
Number of Sequences: 37544
Number of extensions: 346243
Number of successful extensions: 1308
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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