Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18f08
(799 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U01833-1|AAA61932.1| 320|Homo sapiens protein ( Human nucleotid... 312 1e-84
BC109323-1|AAI09324.1| 320|Homo sapiens nucleotide binding prot... 310 4e-84
BC109322-1|AAI09323.1| 320|Homo sapiens nucleotide binding prot... 310 4e-84
AK223204-1|BAD96924.1| 320|Homo sapiens nucleotide binding prot... 310 4e-84
BC100290-1|AAI00291.1| 309|Homo sapiens NUBP1 protein protein. 274 2e-73
BC008005-1|AAH08005.1| 271|Homo sapiens nucleotide binding prot... 238 1e-62
BC002768-1|AAH02768.1| 271|Homo sapiens nucleotide binding prot... 238 1e-62
AL031724-1|CAC36077.1| 265|Homo sapiens C447E6.1 (nucleotide bi... 238 1e-62
AK001023-1|BAA91471.1| 271|Homo sapiens protein ( Homo sapiens ... 238 1e-62
AF118394-1|AAD45242.1| 271|Homo sapiens putative nucleotide bin... 238 1e-62
BC024919-1|AAH24919.1| 289|Homo sapiens nucleotide binding prot... 145 1e-34
AK022722-1|BAB14203.1| 289|Homo sapiens protein ( Homo sapiens ... 145 1e-34
>U01833-1|AAA61932.1| 320|Homo sapiens protein ( Human
nucleotide-binding protein mRNA, complete cds. ).
Length = 320
Score = 312 bits (765), Expect = 1e-84
Identities = 133/194 (68%), Positives = 163/194 (84%)
Frame = -3
Query: 770 VGILDADXCGXSQPRVLGVRGEQVHNSGSGWSPVYVTDNLSLMSIGFLLGSPDDAVIWRG 591
+ +LD D CG S P+++G+ GEQVH SGSGWSPVYV DNL +MS+GFLL SPDDAVIWRG
Sbjct: 87 IALLDIDICGPSIPKIMGLEGEQVHQSGSGWSPVYVEDNLGVMSVGFLLSSPDDAVIWRG 146
Query: 590 PKKNGMIKQFLSEVDWGDLDYLLIDTPPGTSDEHLSAVQYLAQAQVSGALLVTTPQELSL 411
PKKNGMIKQFL +VDWG++DYL++DTPPGTSDEHLS V+YLA A + GA+++TTPQELSL
Sbjct: 147 PKKNGMIKQFLRDVDWGEVDYLIVDTPPGTSDEHLSVVRYLATAHIDGAVIITTPQELSL 206
Query: 410 LDVRKEIDFCRKVGLRVLGVVENMSLFVCPNCKSRSEIFPATSGGAAAMCRELRVPLLGA 231
DVRKEI+FCRKV L ++GVVENMS F+CP CK S+IFP T+GGA MC++L VPLLG
Sbjct: 207 QDVRKEINFCRKVKLPIIGVVENMSPFICPKCKKESQIFPPTTGGAELMCQDLEVPLLGR 266
Query: 230 LPLEPRLARACDSG 189
+PL+P + + CD G
Sbjct: 267 VPLDPLIGKNCDKG 280
>BC109323-1|AAI09324.1| 320|Homo sapiens nucleotide binding protein
1 (MinD homolog, E. coli) protein.
Length = 320
Score = 310 bits (761), Expect = 4e-84
Identities = 132/194 (68%), Positives = 163/194 (84%)
Frame = -3
Query: 770 VGILDADXCGXSQPRVLGVRGEQVHNSGSGWSPVYVTDNLSLMSIGFLLGSPDDAVIWRG 591
+ +LD D CG S P+++G+ GEQVH SGSGWSPVYV DNL +MS+GFLL SPDDAVIWRG
Sbjct: 87 IALLDIDICGPSIPKIMGLEGEQVHQSGSGWSPVYVEDNLGVMSVGFLLSSPDDAVIWRG 146
Query: 590 PKKNGMIKQFLSEVDWGDLDYLLIDTPPGTSDEHLSAVQYLAQAQVSGALLVTTPQELSL 411
PKKNGMIKQFL +VDWG++DYL++DTPPGTSDEHLS V+YLA A + GA+++TTPQE+SL
Sbjct: 147 PKKNGMIKQFLRDVDWGEVDYLIVDTPPGTSDEHLSVVRYLATAHIDGAVIITTPQEVSL 206
Query: 410 LDVRKEIDFCRKVGLRVLGVVENMSLFVCPNCKSRSEIFPATSGGAAAMCRELRVPLLGA 231
DVRKEI+FCRKV L ++GVVENMS F+CP CK S+IFP T+GGA MC++L VPLLG
Sbjct: 207 QDVRKEINFCRKVKLPIIGVVENMSGFICPKCKKESQIFPPTTGGAELMCQDLEVPLLGR 266
Query: 230 LPLEPRLARACDSG 189
+PL+P + + CD G
Sbjct: 267 VPLDPLIGKNCDKG 280
>BC109322-1|AAI09323.1| 320|Homo sapiens nucleotide binding protein
1 (MinD homolog, E. coli) protein.
Length = 320
Score = 310 bits (761), Expect = 4e-84
Identities = 132/194 (68%), Positives = 163/194 (84%)
Frame = -3
Query: 770 VGILDADXCGXSQPRVLGVRGEQVHNSGSGWSPVYVTDNLSLMSIGFLLGSPDDAVIWRG 591
+ +LD D CG S P+++G+ GEQVH SGSGWSPVYV DNL +MS+GFLL SPDDAVIWRG
Sbjct: 87 IALLDIDICGPSIPKIMGLEGEQVHQSGSGWSPVYVEDNLGVMSVGFLLSSPDDAVIWRG 146
Query: 590 PKKNGMIKQFLSEVDWGDLDYLLIDTPPGTSDEHLSAVQYLAQAQVSGALLVTTPQELSL 411
PKKNGMIKQFL +VDWG++DYL++DTPPGTSDEHLS V+YLA A + GA+++TTPQE+SL
Sbjct: 147 PKKNGMIKQFLRDVDWGEVDYLIVDTPPGTSDEHLSVVRYLATAHIDGAVIITTPQEVSL 206
Query: 410 LDVRKEIDFCRKVGLRVLGVVENMSLFVCPNCKSRSEIFPATSGGAAAMCRELRVPLLGA 231
DVRKEI+FCRKV L ++GVVENMS F+CP CK S+IFP T+GGA MC++L VPLLG
Sbjct: 207 QDVRKEINFCRKVKLPIIGVVENMSGFICPKCKKESQIFPPTTGGAELMCQDLEVPLLGR 266
Query: 230 LPLEPRLARACDSG 189
+PL+P + + CD G
Sbjct: 267 VPLDPLIGKNCDKG 280
>AK223204-1|BAD96924.1| 320|Homo sapiens nucleotide binding protein
1 (MinD homolog, E. coli) variant protein.
Length = 320
Score = 310 bits (761), Expect = 4e-84
Identities = 132/194 (68%), Positives = 163/194 (84%)
Frame = -3
Query: 770 VGILDADXCGXSQPRVLGVRGEQVHNSGSGWSPVYVTDNLSLMSIGFLLGSPDDAVIWRG 591
+ +LD D CG S P+++G+ GEQVH SGSGWSPVYV DNL +MS+GFLL SPDDAVIWRG
Sbjct: 87 IALLDIDICGPSIPKIMGLEGEQVHQSGSGWSPVYVEDNLGVMSVGFLLSSPDDAVIWRG 146
Query: 590 PKKNGMIKQFLSEVDWGDLDYLLIDTPPGTSDEHLSAVQYLAQAQVSGALLVTTPQELSL 411
PKKNGMIKQFL +VDWG++DYL++DTPPGTSDEHLS V+YLA A + GA+++TTPQE+SL
Sbjct: 147 PKKNGMIKQFLRDVDWGEVDYLIVDTPPGTSDEHLSVVRYLATAHIDGAVIITTPQEVSL 206
Query: 410 LDVRKEIDFCRKVGLRVLGVVENMSLFVCPNCKSRSEIFPATSGGAAAMCRELRVPLLGA 231
DVRKEI+FCRKV L ++GVVENMS F+CP CK S+IFP T+GGA MC++L VPLLG
Sbjct: 207 QDVRKEINFCRKVKLPIIGVVENMSGFICPKCKKESQIFPPTTGGAELMCQDLEVPLLGR 266
Query: 230 LPLEPRLARACDSG 189
+PL+P + + CD G
Sbjct: 267 VPLDPLIGKNCDKG 280
>BC100290-1|AAI00291.1| 309|Homo sapiens NUBP1 protein protein.
Length = 309
Score = 274 bits (672), Expect = 2e-73
Identities = 122/194 (62%), Positives = 153/194 (78%)
Frame = -3
Query: 770 VGILDADXCGXSQPRVLGVRGEQVHNSGSGWSPVYVTDNLSLMSIGFLLGSPDDAVIWRG 591
+ +LD D CG S P+++G+ GEQ YV DNL +MS+GFLL SPDDAVIWRG
Sbjct: 87 IALLDIDICGPSIPKIMGLEGEQ-----------YVEDNLGVMSVGFLLSSPDDAVIWRG 135
Query: 590 PKKNGMIKQFLSEVDWGDLDYLLIDTPPGTSDEHLSAVQYLAQAQVSGALLVTTPQELSL 411
PKKNGMIKQFL +VDWG++DYL++DTPPGTSDEHLS V+YLA A + GA+++TTPQE+SL
Sbjct: 136 PKKNGMIKQFLRDVDWGEVDYLIVDTPPGTSDEHLSVVRYLATAHIDGAVIITTPQEVSL 195
Query: 410 LDVRKEIDFCRKVGLRVLGVVENMSLFVCPNCKSRSEIFPATSGGAAAMCRELRVPLLGA 231
DVRKEI+FCRKV L ++GVVENMS F+CP CK S+IFP T+GGA MC++L VPLLG
Sbjct: 196 QDVRKEINFCRKVKLPIIGVVENMSGFICPKCKKESQIFPPTTGGAELMCQDLEVPLLGR 255
Query: 230 LPLEPRLARACDSG 189
+PL+P + + CD G
Sbjct: 256 VPLDPLIGKNCDKG 269
>BC008005-1|AAH08005.1| 271|Homo sapiens nucleotide binding protein
2 (MinD homolog, E. coli) protein.
Length = 271
Score = 238 bits (583), Expect = 1e-62
Identities = 107/196 (54%), Positives = 144/196 (73%), Gaps = 2/196 (1%)
Frame = -3
Query: 770 VGILDADXCGXSQPRVLGVRGEQVHNSGSGWSPVYVT--DNLSLMSIGFLLGSPDDAVIW 597
VGILD D CG S PR+LG +G VH GW+PV++ ++SLMS+GFLL PD+AV+W
Sbjct: 46 VGILDVDLCGPSIPRMLGAQGRAVHQCDRGWAPVFLDREQSISLMSVGFLLEKPDEAVVW 105
Query: 596 RGPKKNGMIKQFLSEVDWGDLDYLLIDTPPGTSDEHLSAVQYLAQAQVSGALLVTTPQEL 417
RGPKKN +IKQF+S+V WG+LDYL++DTPPGTSDEH++ ++ L Q GAL+VTTPQ +
Sbjct: 106 RGPKKNALIKQFVSDVAWGELDYLVVDTPPGTSDEHMATIEALRPYQPLGALVVTTPQAV 165
Query: 416 SLLDVRKEIDFCRKVGLRVLGVVENMSLFVCPNCKSRSEIFPATSGGAAAMCRELRVPLL 237
S+ DVR+E+ FCRK GLRV+G+VENMS F CP+C + +F + GG + + VP L
Sbjct: 166 SVGDVRRELTFCRKTGLRVMGIVENMSGFTCPHCTECTSVF--SRGGGEELAQLAGVPFL 223
Query: 236 GALPLEPRLARACDSG 189
G++PL+P L R + G
Sbjct: 224 GSVPLDPALMRTLEEG 239
>BC002768-1|AAH02768.1| 271|Homo sapiens nucleotide binding protein
2 (MinD homolog, E. coli) protein.
Length = 271
Score = 238 bits (583), Expect = 1e-62
Identities = 107/196 (54%), Positives = 144/196 (73%), Gaps = 2/196 (1%)
Frame = -3
Query: 770 VGILDADXCGXSQPRVLGVRGEQVHNSGSGWSPVYVT--DNLSLMSIGFLLGSPDDAVIW 597
VGILD D CG S PR+LG +G VH GW+PV++ ++SLMS+GFLL PD+AV+W
Sbjct: 46 VGILDVDLCGPSIPRMLGAQGRAVHQCDRGWAPVFLDREQSISLMSVGFLLEKPDEAVVW 105
Query: 596 RGPKKNGMIKQFLSEVDWGDLDYLLIDTPPGTSDEHLSAVQYLAQAQVSGALLVTTPQEL 417
RGPKKN +IKQF+S+V WG+LDYL++DTPPGTSDEH++ ++ L Q GAL+VTTPQ +
Sbjct: 106 RGPKKNALIKQFVSDVAWGELDYLVVDTPPGTSDEHMATIEALRPYQPLGALVVTTPQAV 165
Query: 416 SLLDVRKEIDFCRKVGLRVLGVVENMSLFVCPNCKSRSEIFPATSGGAAAMCRELRVPLL 237
S+ DVR+E+ FCRK GLRV+G+VENMS F CP+C + +F + GG + + VP L
Sbjct: 166 SVGDVRRELTFCRKTGLRVMGIVENMSGFTCPHCTECTSVF--SRGGGEELAQLAGVPFL 223
Query: 236 GALPLEPRLARACDSG 189
G++PL+P L R + G
Sbjct: 224 GSVPLDPALMRTLEEG 239
>AL031724-1|CAC36077.1| 265|Homo sapiens C447E6.1 (nucleotide
binding protein 1 (E.coli MinD like) ) protein.
Length = 265
Score = 238 bits (583), Expect = 1e-62
Identities = 107/196 (54%), Positives = 144/196 (73%), Gaps = 2/196 (1%)
Frame = -3
Query: 770 VGILDADXCGXSQPRVLGVRGEQVHNSGSGWSPVYVT--DNLSLMSIGFLLGSPDDAVIW 597
VGILD D CG S PR+LG +G VH GW+PV++ ++SLMS+GFLL PD+AV+W
Sbjct: 40 VGILDVDLCGPSIPRMLGAQGRAVHQCDRGWAPVFLDREQSISLMSVGFLLEKPDEAVVW 99
Query: 596 RGPKKNGMIKQFLSEVDWGDLDYLLIDTPPGTSDEHLSAVQYLAQAQVSGALLVTTPQEL 417
RGPKKN +IKQF+S+V WG+LDYL++DTPPGTSDEH++ ++ L Q GAL+VTTPQ +
Sbjct: 100 RGPKKNALIKQFVSDVAWGELDYLVVDTPPGTSDEHMATIEALRPYQPLGALVVTTPQAV 159
Query: 416 SLLDVRKEIDFCRKVGLRVLGVVENMSLFVCPNCKSRSEIFPATSGGAAAMCRELRVPLL 237
S+ DVR+E+ FCRK GLRV+G+VENMS F CP+C + +F + GG + + VP L
Sbjct: 160 SVGDVRRELTFCRKTGLRVMGIVENMSGFTCPHCTECTSVF--SRGGGEELAQLAGVPFL 217
Query: 236 GALPLEPRLARACDSG 189
G++PL+P L R + G
Sbjct: 218 GSVPLDPALMRTLEEG 233
>AK001023-1|BAA91471.1| 271|Homo sapiens protein ( Homo sapiens
cDNA FLJ10161 fis, clone HEMBA1003555, moderately
similar to NUCLEOTIDE-BINDING PROTEIN. ).
Length = 271
Score = 238 bits (583), Expect = 1e-62
Identities = 107/196 (54%), Positives = 144/196 (73%), Gaps = 2/196 (1%)
Frame = -3
Query: 770 VGILDADXCGXSQPRVLGVRGEQVHNSGSGWSPVYVT--DNLSLMSIGFLLGSPDDAVIW 597
VGILD D CG S PR+LG +G VH GW+PV++ ++SLMS+GFLL PD+AV+W
Sbjct: 46 VGILDVDLCGPSIPRMLGAQGRAVHQCDRGWAPVFLDREQSISLMSVGFLLEKPDEAVVW 105
Query: 596 RGPKKNGMIKQFLSEVDWGDLDYLLIDTPPGTSDEHLSAVQYLAQAQVSGALLVTTPQEL 417
RGPKKN +IKQF+S+V WG+LDYL++DTPPGTSDEH++ ++ L Q GAL+VTTPQ +
Sbjct: 106 RGPKKNALIKQFVSDVAWGELDYLVVDTPPGTSDEHMATIEALRPYQPLGALVVTTPQAV 165
Query: 416 SLLDVRKEIDFCRKVGLRVLGVVENMSLFVCPNCKSRSEIFPATSGGAAAMCRELRVPLL 237
S+ DVR+E+ FCRK GLRV+G+VENMS F CP+C + +F + GG + + VP L
Sbjct: 166 SVGDVRRELTFCRKTGLRVMGIVENMSGFTCPHCTECTSVF--SRGGGEELAQLAGVPFL 223
Query: 236 GALPLEPRLARACDSG 189
G++PL+P L R + G
Sbjct: 224 GSVPLDPALMRTLEEG 239
>AF118394-1|AAD45242.1| 271|Homo sapiens putative nucleotide
binding protein protein.
Length = 271
Score = 238 bits (583), Expect = 1e-62
Identities = 107/196 (54%), Positives = 144/196 (73%), Gaps = 2/196 (1%)
Frame = -3
Query: 770 VGILDADXCGXSQPRVLGVRGEQVHNSGSGWSPVYVT--DNLSLMSIGFLLGSPDDAVIW 597
VGILD D CG S PR+LG +G VH GW+PV++ ++SLMS+GFLL PD+AV+W
Sbjct: 46 VGILDVDLCGPSIPRMLGAQGRAVHQCDRGWAPVFLDREQSISLMSVGFLLEKPDEAVVW 105
Query: 596 RGPKKNGMIKQFLSEVDWGDLDYLLIDTPPGTSDEHLSAVQYLAQAQVSGALLVTTPQEL 417
RGPKKN +IKQF+S+V WG+LDYL++DTPPGTSDEH++ ++ L Q GAL+VTTPQ +
Sbjct: 106 RGPKKNALIKQFVSDVAWGELDYLVVDTPPGTSDEHMATIEALRPYQPLGALVVTTPQAV 165
Query: 416 SLLDVRKEIDFCRKVGLRVLGVVENMSLFVCPNCKSRSEIFPATSGGAAAMCRELRVPLL 237
S+ DVR+E+ FCRK GLRV+G+VENMS F CP+C + +F + GG + + VP L
Sbjct: 166 SVGDVRRELTFCRKTGLRVMGIVENMSGFTCPHCTECTSVF--SRGGGEELAQLAGVPFL 223
Query: 236 GALPLEPRLARACDSG 189
G++PL+P L R + G
Sbjct: 224 GSVPLDPALMRTLEEG 239
>BC024919-1|AAH24919.1| 289|Homo sapiens nucleotide binding
protein-like protein.
Length = 289
Score = 145 bits (352), Expect = 1e-34
Identities = 73/194 (37%), Positives = 120/194 (61%)
Frame = -3
Query: 770 VGILDADXCGXSQPRVLGVRGEQVHNSGSGWSPVYVTDNLSLMSIGFLLGSPDDAVIWRG 591
+G+LD D G S P+++ ++G + + P+ + ++ MS+GFL+ + V+WRG
Sbjct: 71 IGLLDVDVYGPSVPKMMNLKGNPELSQSNLMRPL-LNYGIACMSMGFLV-EESEPVVWRG 128
Query: 590 PKKNGMIKQFLSEVDWGDLDYLLIDTPPGTSDEHLSAVQYLAQAQVSGALLVTTPQELSL 411
I++ L +VDWG LDYL++D PPGT D LS Q + ++GA++V+TPQ+++L
Sbjct: 129 LMVMSAIEKLLRQVDWGQLDYLVVDMPPGTGDVQLSVSQTIP---ITGAVIVSTPQDIAL 185
Query: 410 LDVRKEIDFCRKVGLRVLGVVENMSLFVCPNCKSRSEIFPATSGGAAAMCRELRVPLLGA 231
+D K + R+V + VLG+V+NMS+F CP CK ++ IF A GA + + L + +LG
Sbjct: 186 MDAHKGAEMFRRVHVPVLGLVQNMSVFQCPKCKHKTHIFGA--DGARKLAQTLGLEVLGD 243
Query: 230 LPLEPRLARACDSG 189
+PL + A D+G
Sbjct: 244 IPLHLNIREASDTG 257
>AK022722-1|BAB14203.1| 289|Homo sapiens protein ( Homo sapiens
cDNA FLJ12660 fis, clone NT2RM4002174, moderately
similar to MRP PROTEIN. ).
Length = 289
Score = 145 bits (352), Expect = 1e-34
Identities = 73/194 (37%), Positives = 120/194 (61%)
Frame = -3
Query: 770 VGILDADXCGXSQPRVLGVRGEQVHNSGSGWSPVYVTDNLSLMSIGFLLGSPDDAVIWRG 591
+G+LD D G S P+++ ++G + + P+ + ++ MS+GFL+ + V+WRG
Sbjct: 71 IGLLDVDVYGPSVPKMMNLKGNPELSQSNLMRPL-LNYGIACMSMGFLV-EESEPVVWRG 128
Query: 590 PKKNGMIKQFLSEVDWGDLDYLLIDTPPGTSDEHLSAVQYLAQAQVSGALLVTTPQELSL 411
I++ L +VDWG LDYL++D PPGT D LS Q + ++GA++V+TPQ+++L
Sbjct: 129 LMVMSAIEKLLRQVDWGQLDYLVVDMPPGTGDVQLSVSQNIP---ITGAVIVSTPQDIAL 185
Query: 410 LDVRKEIDFCRKVGLRVLGVVENMSLFVCPNCKSRSEIFPATSGGAAAMCRELRVPLLGA 231
+D K + R+V + VLG+V+NMS+F CP CK ++ IF A GA + + L + +LG
Sbjct: 186 MDAHKGAEMFRRVHVPVLGLVQNMSVFQCPKCKHKTHIFGA--DGARKLAQTLGLEVLGD 243
Query: 230 LPLEPRLARACDSG 189
+PL + A D+G
Sbjct: 244 IPLHLNIREASDTG 257
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,584,448
Number of Sequences: 237096
Number of extensions: 1737160
Number of successful extensions: 5023
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5006
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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