Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f08
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80216-6|CAB02285.2|  313|Caenorhabditis elegans Hypothetical pr...   274   6e-74
Z67738-5|CAA91547.1|  484|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z67735-4|CAA91533.1|  484|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AC006607-4|AAK68171.1|  309|Caenorhabditis elegans Serpentine re...    28   6.7  
Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>Z80216-6|CAB02285.2|  313|Caenorhabditis elegans Hypothetical
           protein F10G8.6 protein.
          Length = 313

 Score =  274 bits (671), Expect = 6e-74
 Identities = 124/195 (63%), Positives = 154/195 (78%), Gaps = 1/195 (0%)
 Frame = -3

Query: 770 VGILDADXCGXSQPRVLGVRGEQVHNSGSGWSPVYVTDNLSLMSIGFLLGSPDDAVIWRG 591
           V ILD D CG SQPR++GV  E+VHNS  GW+PV +  NL+LMSI FLLG  +DAVIWRG
Sbjct: 91  VAILDVDICGPSQPRMMGVEDEEVHNSADGWTPVGIQPNLTLMSIAFLLGDKNDAVIWRG 150

Query: 590 PKKNGMIKQFLSEVDWGDLDYLLIDTPPGTSDEHLSAVQYLAQA-QVSGALLVTTPQELS 414
            +KNGMIKQFL +VDWG++DYLLIDTPPGTSDEH+S VQ+L QA  + GAL+V+TPQE+S
Sbjct: 151 ARKNGMIKQFLKDVDWGEVDYLLIDTPPGTSDEHISLVQFLLQAGPLDGALIVSTPQEVS 210

Query: 413 LLDVRKEIDFCRKVGLRVLGVVENMSLFVCPNCKSRSEIFPATSGGAAAMCRELRVPLLG 234
           LLDVRKE+ FC K  + +LGVVENM+ FVCPNC   + +FP ++GGA  MC++  + LL 
Sbjct: 211 LLDVRKEVSFCVKTKVPILGVVENMARFVCPNCAHTTLLFPTSTGGAEQMCKDSNLELLA 270

Query: 233 ALPLEPRLARACDSG 189
            LPLEP LA+A D+G
Sbjct: 271 QLPLEPALAKALDNG 285


>Z67738-5|CAA91547.1|  484|Caenorhabditis elegans Hypothetical
           protein W03G11.4 protein.
          Length = 484

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +3

Query: 366 EPDFATEVNLFANVEQREFLRRGDQQRARHLRLRQVLHRGQVFVRRT 506
           EPD   ++ + ++   +      +Q   R+   + ++HR Q+F+RRT
Sbjct: 323 EPDQIEDIMVASSFPSKFHRETPEQMLQRNKHYQHLMHRPQIFLRRT 369


>Z67735-4|CAA91533.1|  484|Caenorhabditis elegans Hypothetical
           protein W03G11.4 protein.
          Length = 484

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +3

Query: 366 EPDFATEVNLFANVEQREFLRRGDQQRARHLRLRQVLHRGQVFVRRT 506
           EPD   ++ + ++   +      +Q   R+   + ++HR Q+F+RRT
Sbjct: 323 EPDQIEDIMVASSFPSKFHRETPEQMLQRNKHYQHLMHRPQIFLRRT 369


>AC006607-4|AAK68171.1|  309|Caenorhabditis elegans Serpentine
           receptor, class xa protein5 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -3

Query: 446 ALLVTTPQELSLLDVRKEIDFCRKVGLRVLGVVENMSLFVCPNCKSRSEIF 294
           ALLVT  +E   L   K I F   + + + G++  +++F+  +    SEIF
Sbjct: 23  ALLVTVSKEHGKLGRAKNIPFMYIIFMTMTGIIGKLAIFLMMDAYWISEIF 73


>Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical
           protein F18H3.3a protein.
          Length = 692

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = -2

Query: 720 GRPRRAGPQLRLGVVPCLRYG*LVADVDRVPVGQSRRRRHMEGTEEERYDQAVPERSGLG 541
           G PR  GP +++G  P  + G       + P  Q   R+       ++  Q  P + G G
Sbjct: 534 GAPRVGGPGVQMGGAPIRQQGPAPRGAPQKPFYQGPPRQQQPQQHSQQPAQQ-PGQQGQG 592

Query: 540 RLGLLAH 520
           + G++ H
Sbjct: 593 QSGIVIH 599


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,625,038
Number of Sequences: 27780
Number of extensions: 267412
Number of successful extensions: 821
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)