Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f08
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.3  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   4.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.7  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 605 VIWRGPKKNGMIKQFLSEVDWGDLDYLLIDTP 510
           VIWR P        +L  +   DL +L++  P
Sbjct: 57  VIWRNPSMQTPTNYYLFNLAVSDLLFLILGLP 88


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
          protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 33 ETNLTNGNLSASYF 74
          ETN+TN +++ +YF
Sbjct: 7  ETNITNSSITETYF 20



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 578 GMIKQFLSEVDWGDLDYLLIDTPPGTSDEH 489
           GMI  F++      LD + ID P G S  H
Sbjct: 315 GMIGAFITCFTMPLLDKMHIDDPVGASATH 344


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -3

Query: 602 IWRGPKKNGMIKQFLSEVDWGDLDYLLID--TPPGTSD 495
           IW+G K  G +  F S   +  L  LLI   T PG  +
Sbjct: 224 IWKGVKWTGKVVYFTSLFPYALLTILLIRGLTLPGAME 261


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -3

Query: 602 IWRGPKKNGMIKQFLSEVDWGDLDYLLID--TPPGTSD 495
           IW+G K  G +  F S   +  L  LLI   T PG  +
Sbjct: 277 IWKGVKWTGKVVYFTSLFPYALLTILLIRGLTLPGAME 314


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 533 DYLLIDTPPGTSDEHLSA 480
           DYL++   P +S  +LSA
Sbjct: 815 DYLMVGNSPASSPRYLSA 832


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/53 (18%), Positives = 26/53 (49%)
 Frame = +3

Query: 372 DFATEVNLFANVEQREFLRRGDQQRARHLRLRQVLHRGQVFVRRTGRRIYEQV 530
           DF+ ++ L    +  E     DQ++ +  +L + + +    ++RT   +Y+ +
Sbjct: 347 DFSRDLMLAGTQQSVELKLALDQEQLKSKKLEESMRKLDEEMKRTDELLYQMI 399



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 618 TAQQEPDRHQRQVIRNVNRGPPRA 689
           T Q+ P  H R   + V+ G P A
Sbjct: 609 TIQEPPQWHTRSTEKRVSAGTPAA 632


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,926
Number of Sequences: 438
Number of extensions: 3480
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)