Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f07
         (192 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          24   2.4  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    23   5.6  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    23   5.6  
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce...    23   5.6  
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    22   9.8  
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    22   9.8  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    22   9.8  

>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +3

Query: 72  HHLMAWGLPWQQQSTVTQC 128
           H ++ WG  W++  T  +C
Sbjct: 160 HGVIGWGATWEKSKTQMEC 178


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 43  ERCRERVMFSITSWRGGYHGSSSQ 114
           E  R+RV FS+TS  G     SSQ
Sbjct: 77  EESRKRVSFSLTSNDGAKSDRSSQ 100


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 53  ENG*CLASPHGVGATMAAAVNCDTM 127
           ENG  L  P G GA +A A  C  +
Sbjct: 168 ENGTKLPCPDGYGAFLATACVCSLL 192


>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 395

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -3

Query: 136 GRQHCVTVDCCCHGSPHAM 80
           G  HC +V C   G P  M
Sbjct: 14  GESHCKSVGCIVEGCPPGM 32


>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 25  RKGPILERCRERVMFSITSWRGGYHGSSSQL 117
           +K PI  + R+R  + + +  G Y G+S  +
Sbjct: 216 QKNPITLKIRDRPFYYLLNANGKYAGNSKDV 246


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 190 NSGRKHSRCCTSILRKFSGRQHCVTVDCCCHGSP 89
           NSG + +       RKF+G++  + +    HG P
Sbjct: 133 NSGTEANITAIIAARKFTGKRAVIAMHGGYHGGP 166


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 44  SRIGPFLFYWN 12
           S IGPFL  WN
Sbjct: 715 SSIGPFLISWN 725


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 775,754
Number of Sequences: 5004
Number of extensions: 11517
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)