Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt18f07
         (192 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0231 + 21733151-21734905                                         28   0.91 
05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622     27   1.6  
03_03_0229 - 15612829-15612897,15612982-15613083,15613503-156135...    25   6.4  

>09_06_0231 + 21733151-21734905
          Length = 584

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +2

Query: 65  CLASPHGVGATMAAAVNCDTMLPATKFP 148
           CL  P GVGA       CD M PAT  P
Sbjct: 47  CLRLPLGVGAGGCRVCACDEMDPATAAP 74


>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
          Length = 66

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
 Frame = -3

Query: 187 SGRKHSRCCTSILRKFSGR------QHCVTVDCCC 101
           +G+K  RCC S  R+ + R      + C+   CCC
Sbjct: 24  AGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58


>03_03_0229 -
           15612829-15612897,15612982-15613083,15613503-15613553,
           15613637-15613706,15613816-15613984,15614217-15614326,
           15614443-15614510,15615412-15615480,15616649-15616692,
           15616803-15617050,15617620-15617633
          Length = 337

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 190 NSGRKHSRCCTSILRKFSGR 131
           N+GR+H+  C+S L ++ GR
Sbjct: 200 NNGRQHTGSCSSPLTRYLGR 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,778,358
Number of Sequences: 37544
Number of extensions: 98152
Number of successful extensions: 261
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 14,793,348
effective HSP length: 43
effective length of database: 13,178,956
effective search space used: 263579120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)