Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt18f07
(192 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 29 0.46
Z81579-5|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical pr... 27 1.4
AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans nephrocystin-... 27 1.4
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 26 4.3
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 26 4.3
U50310-4|ABB51170.1| 409|Caenorhabditis elegans Hypothetical pr... 26 4.3
U50310-3|AAA92540.4| 411|Caenorhabditis elegans Hypothetical pr... 26 4.3
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 26 4.3
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 25 5.6
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 25 5.6
Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical pr... 25 7.4
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z49131-4|CAA88977.2| 263|Caenorhabditis elegans Hypothetical pr... 25 9.8
U28734-4|AAR30209.1| 477|Caenorhabditis elegans K (potassium) v... 25 9.8
U28734-3|AAR25654.1| 495|Caenorhabditis elegans K (potassium) v... 25 9.8
U28734-2|AAB52604.3| 490|Caenorhabditis elegans K (potassium) v... 25 9.8
AY150829-1|AAN75511.1| 477|Caenorhabditis elegans KVS-2 protein. 25 9.8
AF541979-1|AAO65852.1| 490|Caenorhabditis elegans KVS-1 protein. 25 9.8
AF026203-1|AAB71246.2| 506|Caenorhabditis elegans Hypothetical ... 25 9.8
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 29.1 bits (62), Expect = 0.46
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 94 YHGSSSQL*HNAAGH*ISVVCLCSSGCAS 180
YH +S QL GH +V CLCSS +S
Sbjct: 896 YHIASEQLIGTFKGHTAAVTCLCSSNDSS 924
>Z81579-5|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical
protein R13H4.1 protein.
Length = 1305
Score = 27.5 bits (58), Expect = 1.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 8 FNSNKTEKVRSWSDVENG 61
FN N +K+R W+D++ G
Sbjct: 828 FNENSLDKIRQWNDLKEG 845
>AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans
nephrocystin-4-like protein protein.
Length = 1305
Score = 27.5 bits (58), Expect = 1.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 8 FNSNKTEKVRSWSDVENG 61
FN N +K+R W+D++ G
Sbjct: 828 FNENSLDKIRQWNDLKEG 845
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 26 EKVRSWSDVENG*CLASPHGVGATMAAAVN 115
E V SW+ N L SPH VG + + N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 26 EKVRSWSDVENG*CLASPHGVGATMAAAVN 115
E V SW+ N L SPH VG + + N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610
>U50310-4|ABB51170.1| 409|Caenorhabditis elegans Hypothetical
protein ZC487.1b protein.
Length = 409
Score = 25.8 bits (54), Expect = 4.3
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = -3
Query: 190 NSGRKHSRCCTS---ILRKFSGRQ-HCVTVDCCCHGSPHAMR*C*TSPVLDIAPGSDLFC 23
+ G + S C+S IL S + H ++C + P+A+ + DI PG + FC
Sbjct: 165 DDGHEFSAVCSSSDGILGCISAIETHRSVLECIQNQQPYALEYLSANQTRDIFPGLESFC 224
Query: 22 FIGIK 8
IK
Sbjct: 225 IQVIK 229
>U50310-3|AAA92540.4| 411|Caenorhabditis elegans Hypothetical
protein ZC487.1a protein.
Length = 411
Score = 25.8 bits (54), Expect = 4.3
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = -3
Query: 190 NSGRKHSRCCTS---ILRKFSGRQ-HCVTVDCCCHGSPHAMR*C*TSPVLDIAPGSDLFC 23
+ G + S C+S IL S + H ++C + P+A+ + DI PG + FC
Sbjct: 167 DDGHEFSAVCSSSDGILGCISAIETHRSVLECIQNQQPYALEYLSANQTRDIFPGLESFC 226
Query: 22 FIGIK 8
IK
Sbjct: 227 IQVIK 231
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 26 EKVRSWSDVENG*CLASPHGVGATMAAAVN 115
E V SW+ N L SPH VG + + N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
protein F57F4.4 protein.
Length = 2090
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = -3
Query: 133 RQHCVTVD-----CCCHGSPHAMR*C*TSPVLDIAPGSDLFCFIGI 11
R +C T+D CCC + C P + PG L C++GI
Sbjct: 678 RNNCSTIDNSLTACCCDSNE-----C-IDPTYNRVPGKALKCYVGI 717
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = -3
Query: 133 RQHCVTVD-----CCCHGSPHAMR*C*TSPVLDIAPGSDLFCFIGI 11
R +C T+D CCC + C P + PG L C++GI
Sbjct: 678 RNNCSTIDNSLTACCCDSNE-----C-IDPTYNRVPGKALKCYVGI 717
>Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical
protein C04A11.4 protein.
Length = 952
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/23 (34%), Positives = 10/23 (43%)
Frame = -3
Query: 172 SRCCTSILRKFSGRQHCVTVDCC 104
+ CC K G C + DCC
Sbjct: 402 NHCCNGSTCKLIGEAECASGDCC 424
>Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical
protein C04A11.4 protein.
Length = 952
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/23 (34%), Positives = 10/23 (43%)
Frame = -3
Query: 172 SRCCTSILRKFSGRQHCVTVDCC 104
+ CC K G C + DCC
Sbjct: 402 NHCCNGSTCKLIGEAECASGDCC 424
>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical
protein K10C2.1 protein.
Length = 2314
Score = 25.0 bits (52), Expect = 7.4
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 26 EKVRSWSDVENG*CLASPHGVG-ATMAAAVNCDTM 127
E V SW+ N L SP GVG + ++N DT+
Sbjct: 654 ENVYSWNKAANVIFLESPRGVGFSVQDPSLNNDTI 688
>Z49131-4|CAA88977.2| 263|Caenorhabditis elegans Hypothetical
protein ZC373.5 protein.
Length = 263
Score = 24.6 bits (51), Expect = 9.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +3
Query: 72 HHLMAWGLPWQQQSTVTQC 128
H L WG W+ +T+C
Sbjct: 200 HGLFVWGPTWESTKIMTEC 218
>U28734-4|AAR30209.1| 477|Caenorhabditis elegans K (potassium)
voltage-gated sensorychannel subunit protein 1, isoform
c protein.
Length = 477
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 20 KTEKVRSWSDVENG*CLASPHGV 88
K+E++ +WS VEN + PH +
Sbjct: 253 KSERISNWSIVENENIIWEPHPI 275
>U28734-3|AAR25654.1| 495|Caenorhabditis elegans K (potassium)
voltage-gated sensorychannel subunit protein 1, isoform
b protein.
Length = 495
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 20 KTEKVRSWSDVENG*CLASPHGV 88
K+E++ +WS VEN + PH +
Sbjct: 258 KSERISNWSIVENENIIWEPHPI 280
>U28734-2|AAB52604.3| 490|Caenorhabditis elegans K (potassium)
voltage-gated sensorychannel subunit protein 1, isoform
a protein.
Length = 490
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 20 KTEKVRSWSDVENG*CLASPHGV 88
K+E++ +WS VEN + PH +
Sbjct: 253 KSERISNWSIVENENIIWEPHPI 275
>AY150829-1|AAN75511.1| 477|Caenorhabditis elegans KVS-2 protein.
Length = 477
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 20 KTEKVRSWSDVENG*CLASPHGV 88
K+E++ +WS VEN + PH +
Sbjct: 253 KSERISNWSIVENENIIWEPHPI 275
>AF541979-1|AAO65852.1| 490|Caenorhabditis elegans KVS-1 protein.
Length = 490
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 20 KTEKVRSWSDVENG*CLASPHGV 88
K+E++ +WS VEN + PH +
Sbjct: 253 KSERISNWSIVENENIIWEPHPI 275
>AF026203-1|AAB71246.2| 506|Caenorhabditis elegans Hypothetical
protein E03E2.1 protein.
Length = 506
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 126 CCRPLNFRSMLVQQRLCFLP 185
C RP F ++ QQR F+P
Sbjct: 419 CFRPSRFENLTEQQRKAFMP 438
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,527,927
Number of Sequences: 27780
Number of extensions: 73246
Number of successful extensions: 184
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 12,740,198
effective HSP length: 43
effective length of database: 11,545,658
effective search space used: 230913160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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